Strain Fitness in Sinorhizobium meliloti 1021 around SMc02760

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02762 and SMc02761 are separated by 139 nucleotidesSMc02761 and SMc02760 are separated by 81 nucleotidesSMc02760 and SMc02759 overlap by 11 nucleotides SMc02762: SMc02762 - transposase, at 32,788 to 33,951 SMc02762 SMc02761: SMc02761 - thioredoxin, at 34,091 to 34,414 SMc02761 SMc02760: SMc02760 - ATP-dependent nuclease/helicase, at 34,496 to 38,065 SMc02760 SMc02759: SMc02759 - hypothetical protein, at 38,055 to 41,234 SMc02759 Position (kb) 34 35 36 37 38 39Strain fitness (log2 ratio) -1 0 1at 33.992 kb on - strandat 38.860 kb on + strand, within SMc02759

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
33,992 - +0.1
38,860 + SMc02759 0.25 +1.3

Or see this region's nucleotide sequence