Strain Fitness in Sinorhizobium meliloti 1021 around SMc02752

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02754 and SMc02753 overlap by 1 nucleotidesSMc02753 and SMc02752 are separated by 280 nucleotidesSMc02752 and SMc04446 overlap by 4 nucleotides SMc02754: SMc02754 - phosphocarrier HPr, at 47,837 to 48,127 SMc02754 SMc02753: SMc02753 - PTS system transporter subunit IIA, at 48,127 to 48,528 SMc02753 SMc02752: SMc02752 - hypothetical protein, at 48,809 to 49,255 SMc02752 SMc04446: SMc04446 - histidine kinase sensory transmembrane protein, at 49,252 to 51,039 SMc04446 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 47.809 kb on + strandat 47.810 kb on - strandat 47.810 kb on - strandat 47.810 kb on - strandat 47.823 kb on + strandat 47.831 kb on + strandat 48.424 kb on + strand, within SMc02753at 48.533 kb on - strandat 48.551 kb on + strandat 48.686 kb on + strandat 48.686 kb on + strandat 48.687 kb on - strandat 48.745 kb on + strandat 48.751 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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47,809 + +0.7
47,810 - -1.1
47,810 - +1.0
47,810 - -0.1
47,823 + +1.0
47,831 + +0.6
48,424 + SMc02753 0.74 -3.3
48,533 - +4.1
48,551 + -1.1
48,686 + +1.4
48,686 + +0.3
48,687 - +0.3
48,745 + +0.5
48,751 + -0.3

Or see this region's nucleotide sequence