Strain Fitness in Sinorhizobium meliloti 1021 around SMc02681

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03744 and SMc02681 are separated by 285 nucleotidesSMc02681 and SMc02682 overlap by 4 nucleotides SMc03744: SMc03744 - hypothetical protein, at 2,529,546 to 2,529,833 SMc03744 SMc02681: SMc02681 - prolipoprotein diacylglyceryl transferase, at 2,530,119 to 2,530,961 SMc02681 SMc02682: SMc02682 - hypothetical protein, at 2,530,958 to 2,532,076 SMc02682 Position (kb) 2530 2531Strain fitness (log2 ratio) -2 -1 0 1at 2529.547 kb on + strandat 2529.889 kb on - strandat 2529.984 kb on + strandat 2529.984 kb on + strandat 2529.985 kb on - strandat 2529.986 kb on + strandat 2529.987 kb on - strandat 2530.008 kb on + strandat 2530.008 kb on + strandat 2530.008 kb on + strandat 2530.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,529,547 + +0.8
2,529,889 - +1.4
2,529,984 + +0.3
2,529,984 + +1.0
2,529,985 - -2.7
2,529,986 + -0.2
2,529,987 - +0.6
2,530,008 + -0.0
2,530,008 + +0.3
2,530,008 + +0.5
2,530,009 - -0.4

Or see this region's nucleotide sequence