Strain Fitness in Sinorhizobium meliloti 1021 around SMc02501

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02503 and SMc02502 are separated by 356 nucleotidesSMc02502 and SMc02501 are separated by 116 nucleotidesSMc02501 and SMc02500 are separated by 24 nucleotidesSMc02500 and SMc02499 are separated by 27 nucleotides SMc02503: SMc02503 - hypothetical protein, at 3,289,155 to 3,290,258 SMc02503 SMc02502: SMc02502 - F0F1 ATP synthase subunit epsilon, at 3,290,615 to 3,291,025 SMc02502 SMc02501: SMc02501 - F0F1 ATP synthase subunit beta, at 3,291,142 to 3,292,656 SMc02501 SMc02500: SMc02500 - F0F1 ATP synthase subunit gamma, at 3,292,681 to 3,293,565 SMc02500 SMc02499: SMc02499 - F0F1 ATP synthase subunit alpha, at 3,293,593 to 3,295,122 SMc02499 Position (kb) 3291 3292 3293Strain fitness (log2 ratio) -1 0 1at 3290.218 kb on - strandat 3290.221 kb on - strandat 3290.221 kb on - strandat 3290.221 kb on - strandat 3290.525 kb on + strandat 3290.525 kb on + strandat 3290.526 kb on - strandat 3290.539 kb on - strandat 3290.593 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
3,290,218 - -0.1
3,290,221 - -0.2
3,290,221 - +1.1
3,290,221 - +1.2
3,290,525 + +0.1
3,290,525 + +0.2
3,290,526 - +0.0
3,290,539 - +1.3
3,290,593 - -1.5

Or see this region's nucleotide sequence