Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02308 and SMc02309 are separated by 13 nucleotides SMc02309 and SMc02310 are separated by 157 nucleotides SMc02310 and SMc02311 are separated by 97 nucleotides SMc02311 and SMc02312 are separated by 4 nucleotides
SMc02308: SMc02308 - hypothetical protein, at 681,194 to 681,670
SMc02308
SMc02309: SMc02309 - arsenate reductase, at 681,684 to 682,163
SMc02309
SMc02310: SMc02310 - translation initiation factor IF-1, at 682,321 to 682,539
SMc02310
SMc02311: SMc02311 - Maf-like protein, at 682,637 to 683,257
SMc02311
SMc02312: SMc02312 - zinc-binding protein, at 683,262 to 683,474
SMc02312
Position (kb) 682
683 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 681.454 kb on + strand, within SMc02308 at 681.467 kb on + strand, within SMc02308 at 681.467 kb on + strand, within SMc02308 at 681.488 kb on + strand, within SMc02308 at 681.488 kb on + strand, within SMc02308 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.930 kb on + strand, within SMc02309 at 681.930 kb on + strand, within SMc02309 at 682.013 kb on - strand, within SMc02309 at 682.015 kb on - strand, within SMc02309 at 682.015 kb on - strand, within SMc02309 at 682.253 kb on + strand at 682.537 kb on + strand at 682.537 kb on + strand at 682.622 kb on + strand at 683.358 kb on + strand, within SMc02312 at 683.359 kb on - strand, within SMc02312 at 683.418 kb on + strand, within SMc02312 at 683.418 kb on + strand, within SMc02312 at 683.418 kb on + strand, within SMc02312 at 683.419 kb on - strand, within SMc02312 at 683.500 kb on + strand at 683.500 kb on + strand at 683.500 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 681,454 + SMc02308 0.55 -4.5 681,467 + SMc02308 0.57 +0.3 681,467 + SMc02308 0.57 +1.1 681,488 + SMc02308 0.62 +0.9 681,488 + SMc02308 0.62 -0.9 681,808 - SMc02309 0.26 -0.5 681,808 - SMc02309 0.26 +1.5 681,808 - SMc02309 0.26 -2.0 681,808 - SMc02309 0.26 -0.9 681,808 - SMc02309 0.26 -0.5 681,808 - SMc02309 0.26 +0.1 681,808 - SMc02309 0.26 -0.7 681,808 - SMc02309 0.26 -0.4 681,930 + SMc02309 0.51 -0.1 681,930 + SMc02309 0.51 -0.2 682,013 - SMc02309 0.69 -2.6 682,015 - SMc02309 0.69 -1.9 682,015 - SMc02309 0.69 +5.1 682,253 + -0.6 682,537 + -1.3 682,537 + -3.5 682,622 + -2.3 683,358 + SMc02312 0.45 -1.8 683,359 - SMc02312 0.46 +1.4 683,418 + SMc02312 0.73 +0.0 683,418 + SMc02312 0.73 -2.0 683,418 + SMc02312 0.73 +0.1 683,419 - SMc02312 0.74 -1.0 683,500 + -1.2 683,500 + -0.4 683,500 + +0.2
Or see this region's nucleotide sequence