Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04430 and SMc02303 are separated by 143 nucleotides SMc02303 and SMc02208 are separated by 252 nucleotides SMc02208 and SMc02304 are separated by 261 nucleotides SMc02304 and SMc02305 are separated by 170 nucleotides
SMc04430: SMc04430 - transposase number 1 for insertion sequence ISRM30, at 676,470 to 676,640
SMc04430
SMc02303: SMc02303 - partial transposase for insertion sequence element ISRM1, at 676,784 to 676,966
SMc02303
SMc02208: SMc02208 - tRNA-Thr, at 677,219 to 677,293
SMc02208
SMc02304: SMc02304 - hypothetical protein, at 677,555 to 677,770
SMc02304
SMc02305: SMc02305 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 677,941 to 679,233
SMc02305
Position (kb) 677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 676.821 kb on - strand, within SMc02303 at 677.000 kb on + strand at 677.000 kb on + strand at 677.000 kb on + strand at 677.001 kb on - strand at 677.042 kb on + strand at 677.085 kb on - strand at 677.085 kb on - strand at 677.085 kb on - strand at 677.145 kb on - strand at 677.581 kb on + strand, within SMc02304 at 677.581 kb on + strand, within SMc02304 at 677.582 kb on - strand, within SMc02304 at 677.582 kb on - strand, within SMc02304 at 677.768 kb on + strand at 677.769 kb on - strand at 677.864 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 676,821 - SMc02303 0.20 -0.6 677,000 + +1.9 677,000 + +1.3 677,000 + -2.3 677,001 - -0.1 677,042 + +0.2 677,085 - +0.3 677,085 - -0.5 677,085 - -0.8 677,145 - +0.3 677,581 + SMc02304 0.12 -0.7 677,581 + SMc02304 0.12 -0.4 677,582 - SMc02304 0.12 -0.6 677,582 - SMc02304 0.12 +0.1 677,768 + +0.0 677,769 - +0.6 677,864 + -0.9
Or see this region's nucleotide sequence