Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02220 and SMc02221 are separated by 78 nucleotides SMc02221 and SMc02222 are separated by 112 nucleotides SMc02222 and SMc02223 are separated by 9 nucleotides SMc02223 and SMc02224 are separated by 225 nucleotides
SMc02220: SMc02220 - hypothetical protein, at 582,385 to 583,197
SMc02220
SMc02221: SMc02221 - hypothetical protein, at 583,276 to 583,686
SMc02221
SMc02222: SMc02222 - hypothetical protein, at 583,799 to 584,605
SMc02222
SMc02223: SMc02223 - transcriptional regulator, at 584,615 to 585,271
SMc02223
SMc02224: SMc02224 - calcium/proton antiporter transmembrane protein, at 585,497 to 586,582
SMc02224
Position (kb) 583
584
585 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 582.850 kb on + strand, within SMc02220 at 582.850 kb on + strand, within SMc02220 at 582.978 kb on + strand, within SMc02220 at 582.979 kb on - strand, within SMc02220 at 583.030 kb on + strand, within SMc02220 at 583.031 kb on - strand, within SMc02220 at 583.041 kb on + strand, within SMc02220 at 583.042 kb on - strand, within SMc02220 at 583.042 kb on - strand, within SMc02220 at 583.042 kb on - strand, within SMc02220 at 583.190 kb on + strand at 583.190 kb on + strand at 583.233 kb on + strand at 583.234 kb on - strand at 583.234 kb on - strand at 583.234 kb on - strand at 583.277 kb on + strand at 583.424 kb on + strand, within SMc02221 at 583.425 kb on - strand, within SMc02221 at 583.437 kb on - strand, within SMc02221 at 583.437 kb on - strand, within SMc02221 at 583.728 kb on + strand at 583.729 kb on - strand at 583.781 kb on - strand at 583.801 kb on - strand at 583.801 kb on - strand at 583.801 kb on - strand at 584.167 kb on + strand, within SMc02222 at 584.554 kb on - strand at 584.554 kb on - strand at 584.616 kb on + strand at 584.617 kb on - strand at 584.874 kb on + strand, within SMc02223 at 584.874 kb on + strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 585.095 kb on + strand, within SMc02223 at 585.096 kb on - strand, within SMc02223 at 585.096 kb on - strand, within SMc02223 at 585.338 kb on - strand at 585.383 kb on - strand at 585.412 kb on + strand at 585.412 kb on + strand at 585.464 kb on + strand at 585.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 582,850 + SMc02220 0.57 -0.2 582,850 + SMc02220 0.57 -1.1 582,978 + SMc02220 0.73 +1.0 582,979 - SMc02220 0.73 -0.1 583,030 + SMc02220 0.79 +0.2 583,031 - SMc02220 0.79 +0.4 583,041 + SMc02220 0.81 -2.4 583,042 - SMc02220 0.81 +0.4 583,042 - SMc02220 0.81 +0.2 583,042 - SMc02220 0.81 +2.2 583,190 + +1.6 583,190 + -2.7 583,233 + -2.5 583,234 - +0.0 583,234 - +0.3 583,234 - -3.1 583,277 + +1.3 583,424 + SMc02221 0.36 -2.3 583,425 - SMc02221 0.36 -0.8 583,437 - SMc02221 0.39 -2.2 583,437 - SMc02221 0.39 -0.6 583,728 + +0.3 583,729 - -0.2 583,781 - +1.2 583,801 - +0.2 583,801 - -0.1 583,801 - +0.6 584,167 + SMc02222 0.46 -0.1 584,554 - +0.5 584,554 - +2.7 584,616 + +2.6 584,617 - -2.7 584,874 + SMc02223 0.39 +1.0 584,874 + SMc02223 0.39 -0.3 584,875 - SMc02223 0.40 +0.7 584,875 - SMc02223 0.40 -0.7 584,875 - SMc02223 0.40 -0.6 584,875 - SMc02223 0.40 -0.7 585,095 + SMc02223 0.73 +0.9 585,096 - SMc02223 0.73 +0.6 585,096 - SMc02223 0.73 +0.2 585,338 - +0.5 585,383 - -3.2 585,412 + -3.0 585,412 + -2.2 585,464 + -0.2 585,464 + -1.9
Or see this region's nucleotide sequence