Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02189 and SMc02200 are separated by 1 nucleotides SMc02200 and SMc02184 are separated by 136 nucleotides SMc02184 and SMc02199 are separated by 279 nucleotides
SMc02189: SMc02189 - hypothetical protein, at 545,715 to 545,969
SMc02189
SMc02200: SMc02200 - hypothetical protein, at 545,971 to 546,495
SMc02200
SMc02184: SMc02184 - transcriptional regulator, at 546,632 to 546,901
SMc02184
SMc02199: SMc02199 - hypothetical protein, at 547,181 to 547,675
SMc02199
Position (kb) 545
546
547 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 544.991 kb on - strand at 544.993 kb on + strand at 544.993 kb on + strand at 544.994 kb on - strand at 544.994 kb on - strand at 545.118 kb on - strand at 545.273 kb on - strand at 545.273 kb on - strand at 545.284 kb on + strand at 545.285 kb on - strand at 545.288 kb on + strand at 545.289 kb on - strand at 545.289 kb on - strand at 545.361 kb on + strand at 545.397 kb on + strand at 545.397 kb on + strand at 545.397 kb on + strand at 545.398 kb on - strand at 545.430 kb on - strand at 545.434 kb on + strand at 545.438 kb on + strand at 545.439 kb on - strand at 545.443 kb on + strand at 545.443 kb on + strand at 545.443 kb on + strand at 545.755 kb on + strand, within SMc02189 at 545.796 kb on - strand, within SMc02189 at 545.915 kb on + strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.916 kb on - strand, within SMc02189 at 545.919 kb on + strand, within SMc02189 at 545.920 kb on - strand, within SMc02189 at 545.933 kb on + strand, within SMc02189 at 545.934 kb on - strand, within SMc02189 at 545.934 kb on - strand, within SMc02189 at 545.951 kb on - strand at 546.070 kb on + strand, within SMc02200 at 546.070 kb on + strand, within SMc02200 at 546.095 kb on - strand, within SMc02200 at 546.095 kb on - strand, within SMc02200 at 546.135 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.171 kb on - strand, within SMc02200 at 546.175 kb on - strand, within SMc02200 at 546.201 kb on + strand, within SMc02200 at 546.326 kb on + strand, within SMc02200 at 546.333 kb on + strand, within SMc02200 at 546.333 kb on + strand, within SMc02200 at 546.398 kb on - strand, within SMc02200 at 546.398 kb on - strand, within SMc02200 at 546.400 kb on + strand, within SMc02200 at 546.469 kb on + strand at 546.469 kb on + strand at 546.556 kb on + strand at 546.557 kb on - strand at 546.557 kb on - strand at 546.562 kb on - strand at 546.615 kb on + strand at 546.616 kb on - strand at 546.690 kb on + strand, within SMc02184 at 546.691 kb on - strand, within SMc02184 at 546.735 kb on - strand, within SMc02184 at 546.783 kb on + strand, within SMc02184 at 546.783 kb on + strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.896 kb on - strand at 546.896 kb on - strand at 546.896 kb on - strand at 546.899 kb on + strand at 547.051 kb on - strand at 547.051 kb on - strand at 547.051 kb on - strand at 547.151 kb on + strand at 547.151 kb on + strand at 547.152 kb on - strand at 547.152 kb on - strand at 547.222 kb on - strand at 547.222 kb on - strand at 547.225 kb on + strand at 547.225 kb on + strand at 547.225 kb on + strand at 547.226 kb on - strand at 547.232 kb on + strand, within SMc02199 at 547.232 kb on + strand, within SMc02199 at 547.233 kb on - strand, within SMc02199 at 547.233 kb on - strand, within SMc02199 at 547.233 kb on - strand, within SMc02199 at 547.262 kb on + strand, within SMc02199 at 547.262 kb on + strand, within SMc02199 at 547.262 kb on + strand, within SMc02199 at 547.371 kb on + strand, within SMc02199 at 547.372 kb on - strand, within SMc02199 at 547.372 kb on - strand, within SMc02199 at 547.418 kb on + strand, within SMc02199 at 547.418 kb on + strand, within SMc02199 at 547.419 kb on - strand, within SMc02199 at 547.459 kb on - strand, within SMc02199 at 547.465 kb on + strand, within SMc02199 at 547.465 kb on + strand, within SMc02199 at 547.465 kb on + strand, within SMc02199 at 547.466 kb on - strand, within SMc02199 at 547.466 kb on - strand, within SMc02199
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 544,991 - -0.2 544,993 + +0.2 544,993 + +1.2 544,994 - -1.9 544,994 - -1.0 545,118 - +1.2 545,273 - +1.4 545,273 - +3.8 545,284 + +0.6 545,285 - -0.6 545,288 + -1.5 545,289 - +0.5 545,289 - +0.4 545,361 + -1.0 545,397 + -1.3 545,397 + +1.1 545,397 + -0.9 545,398 - +1.5 545,430 - +0.4 545,434 + -3.0 545,438 + -0.9 545,439 - +1.2 545,443 + +1.2 545,443 + -0.0 545,443 + -0.3 545,755 + SMc02189 0.16 +0.2 545,796 - SMc02189 0.32 -1.0 545,915 + SMc02189 0.78 -0.3 545,916 - SMc02189 0.79 -0.2 545,916 - SMc02189 0.79 -1.2 545,916 - SMc02189 0.79 -3.1 545,916 - SMc02189 0.79 -0.3 545,916 - SMc02189 0.79 +0.8 545,919 + SMc02189 0.80 +0.4 545,920 - SMc02189 0.80 +2.2 545,933 + SMc02189 0.85 -0.1 545,934 - SMc02189 0.86 +0.1 545,934 - SMc02189 0.86 -0.4 545,951 - +1.5 546,070 + SMc02200 0.19 +1.0 546,070 + SMc02200 0.19 -1.2 546,095 - SMc02200 0.24 -1.2 546,095 - SMc02200 0.24 +0.2 546,135 - SMc02200 0.31 -0.4 546,171 - SMc02200 0.38 +0.3 546,171 - SMc02200 0.38 +0.6 546,171 - SMc02200 0.38 +1.6 546,171 - SMc02200 0.38 +1.8 546,175 - SMc02200 0.39 -0.1 546,201 + SMc02200 0.44 -0.4 546,326 + SMc02200 0.68 +1.9 546,333 + SMc02200 0.69 +4.3 546,333 + SMc02200 0.69 -1.3 546,398 - SMc02200 0.81 +1.1 546,398 - SMc02200 0.81 -1.0 546,400 + SMc02200 0.82 -0.5 546,469 + +0.6 546,469 + +1.1 546,556 + -1.0 546,557 - +0.4 546,557 - +1.3 546,562 - -2.8 546,615 + -2.5 546,616 - +2.0 546,690 + SMc02184 0.21 +1.6 546,691 - SMc02184 0.22 -0.7 546,735 - SMc02184 0.38 -2.4 546,783 + SMc02184 0.56 -0.8 546,783 + SMc02184 0.56 +2.2 546,784 - SMc02184 0.56 -2.6 546,784 - SMc02184 0.56 -0.2 546,784 - SMc02184 0.56 +0.5 546,895 + +0.0 546,895 + -0.7 546,895 + -0.1 546,895 + +0.5 546,895 + +0.4 546,896 - -2.0 546,896 - +0.0 546,896 - +0.6 546,899 + -2.0 547,051 - -0.3 547,051 - -0.1 547,051 - +0.9 547,151 + -1.4 547,151 + -0.3 547,152 - -1.3 547,152 - -1.4 547,222 - +0.1 547,222 - +0.8 547,225 + +1.8 547,225 + -1.2 547,225 + -0.2 547,226 - -0.1 547,232 + SMc02199 0.10 -0.6 547,232 + SMc02199 0.10 -0.5 547,233 - SMc02199 0.11 +0.8 547,233 - SMc02199 0.11 -0.3 547,233 - SMc02199 0.11 -1.9 547,262 + SMc02199 0.16 -1.4 547,262 + SMc02199 0.16 -0.1 547,262 + SMc02199 0.16 +0.6 547,371 + SMc02199 0.38 -0.5 547,372 - SMc02199 0.39 +1.3 547,372 - SMc02199 0.39 +1.0 547,418 + SMc02199 0.48 +0.4 547,418 + SMc02199 0.48 -1.1 547,419 - SMc02199 0.48 -2.3 547,459 - SMc02199 0.56 +0.7 547,465 + SMc02199 0.57 -0.1 547,465 + SMc02199 0.57 +0.3 547,465 + SMc02199 0.57 +0.5 547,466 - SMc02199 0.58 -0.5 547,466 - SMc02199 0.58 +0.9
Or see this region's nucleotide sequence