Strain Fitness in Sinorhizobium meliloti 1021 around SMc02096

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02098 and SMc02097 are separated by 36 nucleotidesSMc02097 and SMc02096 overlap by 1 nucleotidesSMc02096 and SMc02095 are separated by 130 nucleotides SMc02098: SMc02098 - ribosome recycling factor, at 1,610,658 to 1,611,218 SMc02098 SMc02097: SMc02097 - UDP pyrophosphate synthase, at 1,611,255 to 1,611,998 SMc02097 SMc02096: SMc02096 - phosphatidate cytidylyltransferase, at 1,611,998 to 1,612,831 SMc02096 SMc02095: SMc02095 - hypothetical protein, at 1,612,962 to 1,614,086 SMc02095 Position (kb) 1611 1612 1613Strain fitness (log2 ratio) -2 -1 0 1 2at 1612.845 kb on - strandat 1612.851 kb on + strandat 1612.851 kb on + strandat 1612.851 kb on + strandat 1612.852 kb on - strandat 1612.852 kb on - strandat 1612.852 kb on - strandat 1612.873 kb on + strandat 1612.874 kb on - strandat 1612.952 kb on - strandat 1612.961 kb on + strandat 1612.961 kb on + strandat 1612.962 kb on - strandat 1612.969 kb on + strandat 1613.052 kb on + strandat 1613.052 kb on + strandat 1613.053 kb on - strandat 1613.265 kb on - strand, within SMc02095at 1613.265 kb on - strand, within SMc02095at 1613.370 kb on + strand, within SMc02095at 1613.371 kb on - strand, within SMc02095at 1613.508 kb on + strand, within SMc02095at 1613.509 kb on - strand, within SMc02095at 1613.689 kb on - strand, within SMc02095at 1613.740 kb on + strand, within SMc02095at 1613.741 kb on - strand, within SMc02095

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,612,845 - +0.1
1,612,851 + -0.3
1,612,851 + -1.3
1,612,851 + -0.7
1,612,852 - -1.5
1,612,852 - +0.9
1,612,852 - +1.8
1,612,873 + +1.6
1,612,874 - +0.4
1,612,952 - -1.2
1,612,961 + +0.6
1,612,961 + -2.3
1,612,962 - +0.4
1,612,969 + +2.6
1,613,052 + -0.5
1,613,052 + -0.5
1,613,053 - -1.0
1,613,265 - SMc02095 0.27 -1.8
1,613,265 - SMc02095 0.27 +0.2
1,613,370 + SMc02095 0.36 +0.1
1,613,371 - SMc02095 0.36 +0.9
1,613,508 + SMc02095 0.49 -0.0
1,613,509 - SMc02095 0.49 +1.0
1,613,689 - SMc02095 0.65 -1.0
1,613,740 + SMc02095 0.69 +0.2
1,613,741 - SMc02095 0.69 +0.2

Or see this region's nucleotide sequence