Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01938 and SMc01936 are separated by 443 nucleotides SMc01936 and SMc01937 are separated by 69 nucleotides SMc01937 and SMc01912 are separated by 302 nucleotides SMc01912 and SMc01913 overlap by 10 nucleotides
SMc01938: SMc01938 - tRNA-Val, at 1,377,215 to 1,377,290
SMc01938
SMc01936: SMc01936 - tRNA-Asp, at 1,377,734 to 1,377,810
SMc01936
SMc01937: SMc01937 - tRNA-Asp, at 1,377,880 to 1,377,956
SMc01937
SMc01912: SMc01912 - NADH dehydrogenase subunit A, at 1,378,259 to 1,378,624
SMc01912
SMc01913: SMc01913 - NADH dehydrogenase subunit B, at 1,378,615 to 1,379,193
SMc01913
Position (kb)
1377
1378 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1376.923 kb on + strand at 1377.050 kb on - strand at 1377.121 kb on - strand at 1377.432 kb on - strand at 1377.453 kb on + strand at 1377.454 kb on - strand at 1377.498 kb on + strand at 1377.498 kb on + strand at 1377.498 kb on + strand at 1377.498 kb on + strand at 1377.499 kb on - strand at 1377.499 kb on - strand at 1377.499 kb on - strand at 1377.499 kb on - strand at 1377.500 kb on + strand at 1377.500 kb on + strand at 1377.500 kb on + strand at 1377.500 kb on + strand at 1377.500 kb on + strand at 1377.500 kb on + strand at 1377.500 kb on + strand at 1377.500 kb on + strand at 1377.501 kb on - strand at 1377.501 kb on - strand at 1377.501 kb on - strand at 1377.501 kb on - strand at 1377.501 kb on - strand at 1377.501 kb on - strand at 1377.502 kb on + strand at 1377.502 kb on + strand at 1377.502 kb on + strand at 1377.502 kb on + strand at 1377.502 kb on + strand at 1377.502 kb on + strand at 1377.503 kb on - strand at 1377.503 kb on - strand at 1377.503 kb on - strand at 1377.504 kb on + strand at 1377.504 kb on + strand at 1377.504 kb on + strand at 1377.504 kb on + strand at 1377.505 kb on - strand at 1377.855 kb on + strand at 1377.855 kb on + strand at 1377.855 kb on + strand at 1378.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,376,923 + +0.2 1,377,050 - -0.3 1,377,121 - +2.2 1,377,432 - +0.6 1,377,453 + -1.8 1,377,454 - -0.1 1,377,498 + -1.1 1,377,498 + +0.6 1,377,498 + +0.7 1,377,498 + -0.1 1,377,499 - +0.7 1,377,499 - -0.5 1,377,499 - +0.2 1,377,499 - -0.1 1,377,500 + -1.5 1,377,500 + -1.6 1,377,500 + -3.2 1,377,500 + -0.4 1,377,500 + -1.4 1,377,500 + -0.5 1,377,500 + -0.7 1,377,500 + +0.6 1,377,501 - +0.1 1,377,501 - -0.4 1,377,501 - +2.1 1,377,501 - +1.8 1,377,501 - -0.5 1,377,501 - -0.2 1,377,502 + +0.0 1,377,502 + -1.8 1,377,502 + +0.6 1,377,502 + +0.2 1,377,502 + +0.3 1,377,502 + -1.0 1,377,503 - -1.1 1,377,503 - -1.5 1,377,503 - -0.8 1,377,504 + +0.1 1,377,504 + -0.6 1,377,504 + -0.6 1,377,504 + -2.3 1,377,505 - +0.8 1,377,855 + -1.0 1,377,855 + -2.2 1,377,855 + -2.4 1,378,108 - +0.2
Or see this region's nucleotide sequence