Strain Fitness in Sinorhizobium meliloti 1021 around SMc01936

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01938 and SMc01936 are separated by 443 nucleotidesSMc01936 and SMc01937 are separated by 69 nucleotidesSMc01937 and SMc01912 are separated by 302 nucleotidesSMc01912 and SMc01913 overlap by 10 nucleotides SMc01938: SMc01938 - tRNA-Val, at 1,377,215 to 1,377,290 SMc01938 SMc01936: SMc01936 - tRNA-Asp, at 1,377,734 to 1,377,810 SMc01936 SMc01937: SMc01937 - tRNA-Asp, at 1,377,880 to 1,377,956 SMc01937 SMc01912: SMc01912 - NADH dehydrogenase subunit A, at 1,378,259 to 1,378,624 SMc01912 SMc01913: SMc01913 - NADH dehydrogenase subunit B, at 1,378,615 to 1,379,193 SMc01913 Position (kb) 1377 1378Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1376.923 kb on + strandat 1377.050 kb on - strandat 1377.121 kb on - strandat 1377.432 kb on - strandat 1377.453 kb on + strandat 1377.454 kb on - strandat 1377.498 kb on + strandat 1377.498 kb on + strandat 1377.498 kb on + strandat 1377.498 kb on + strandat 1377.499 kb on - strandat 1377.499 kb on - strandat 1377.499 kb on - strandat 1377.499 kb on - strandat 1377.500 kb on + strandat 1377.500 kb on + strandat 1377.500 kb on + strandat 1377.500 kb on + strandat 1377.500 kb on + strandat 1377.500 kb on + strandat 1377.500 kb on + strandat 1377.500 kb on + strandat 1377.501 kb on - strandat 1377.501 kb on - strandat 1377.501 kb on - strandat 1377.501 kb on - strandat 1377.501 kb on - strandat 1377.501 kb on - strandat 1377.502 kb on + strandat 1377.502 kb on + strandat 1377.502 kb on + strandat 1377.502 kb on + strandat 1377.502 kb on + strandat 1377.502 kb on + strandat 1377.503 kb on - strandat 1377.503 kb on - strandat 1377.503 kb on - strandat 1377.504 kb on + strandat 1377.504 kb on + strandat 1377.504 kb on + strandat 1377.504 kb on + strandat 1377.505 kb on - strandat 1377.855 kb on + strandat 1377.855 kb on + strandat 1377.855 kb on + strandat 1378.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,376,923 + +0.2
1,377,050 - -0.3
1,377,121 - +2.2
1,377,432 - +0.6
1,377,453 + -1.8
1,377,454 - -0.1
1,377,498 + -1.1
1,377,498 + +0.6
1,377,498 + +0.7
1,377,498 + -0.1
1,377,499 - +0.7
1,377,499 - -0.5
1,377,499 - +0.2
1,377,499 - -0.1
1,377,500 + -1.5
1,377,500 + -1.6
1,377,500 + -3.2
1,377,500 + -0.4
1,377,500 + -1.4
1,377,500 + -0.5
1,377,500 + -0.7
1,377,500 + +0.6
1,377,501 - +0.1
1,377,501 - -0.4
1,377,501 - +2.1
1,377,501 - +1.8
1,377,501 - -0.5
1,377,501 - -0.2
1,377,502 + +0.0
1,377,502 + -1.8
1,377,502 + +0.6
1,377,502 + +0.2
1,377,502 + +0.3
1,377,502 + -1.0
1,377,503 - -1.1
1,377,503 - -1.5
1,377,503 - -0.8
1,377,504 + +0.1
1,377,504 + -0.6
1,377,504 + -0.6
1,377,504 + -2.3
1,377,505 - +0.8
1,377,855 + -1.0
1,377,855 + -2.2
1,377,855 + -2.4
1,378,108 - +0.2

Or see this region's nucleotide sequence