Strain Fitness in Sinorhizobium meliloti 1021 around SMc01862

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01863 and SMc01862 are separated by 241 nucleotidesSMc01862 and SMc01861 are separated by 1 nucleotides SMc01863: SMc01863 - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 2,348,332 to 2,349,432 SMc01863 SMc01862: SMc01862 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase, at 2,349,674 to 2,351,107 SMc01862 SMc01861: SMc01861 - UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, at 2,351,109 to 2,352,569 SMc01861 Position (kb) 2349 2350 2351 2352Strain fitness (log2 ratio) -1 0 1at 2349.515 kb on - strandat 2349.515 kb on - strandat 2349.515 kb on - strandat 2349.515 kb on - strandat 2349.547 kb on - strandat 2349.676 kb on - strandat 2349.676 kb on - strandat 2349.676 kb on - strandat 2349.678 kb on - strandat 2349.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,349,515 - +0.1
2,349,515 - -0.2
2,349,515 - -1.1
2,349,515 - -1.2
2,349,547 - +0.6
2,349,676 - +1.3
2,349,676 - -0.3
2,349,676 - +0.1
2,349,678 - +0.8
2,349,678 - -0.0

Or see this region's nucleotide sequence