Strain Fitness in Sinorhizobium meliloti 1021 around SMc01784

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01782 and SMc01783 are separated by 82 nucleotidesSMc01783 and SMc01784 are separated by 193 nucleotidesSMc01784 and SMc01785 are separated by 18 nucleotides SMc01782: SMc01782 - hypothetical protein, at 1,327,935 to 1,328,471 SMc01782 SMc01783: SMc01783 - hypothetical protein, at 1,328,554 to 1,329,105 SMc01783 SMc01784: SMc01784 - glycerol-3-phosphate acyltransferase PlsX, at 1,329,299 to 1,330,342 SMc01784 SMc01785: SMc01785 - 3-oxoacyl-ACP synthase, at 1,330,361 to 1,331,332 SMc01785 Position (kb) 1329 1330 1331Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1328.414 kb on + strand, within SMc01782at 1328.414 kb on + strand, within SMc01782at 1328.605 kb on - strandat 1328.944 kb on - strand, within SMc01783at 1329.156 kb on + strandat 1329.216 kb on + strandat 1329.264 kb on + strandat 1329.264 kb on + strandat 1330.301 kb on + strandat 1330.301 kb on + strandat 1330.301 kb on + strandat 1330.301 kb on + strandat 1331.339 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,328,414 + SMc01782 0.89 -2.5
1,328,414 + SMc01782 0.89 +0.6
1,328,605 - -0.7
1,328,944 - SMc01783 0.71 +0.3
1,329,156 + +2.8
1,329,216 + -1.4
1,329,264 + +0.1
1,329,264 + -1.4
1,330,301 + +0.5
1,330,301 + +0.8
1,330,301 + -0.9
1,330,301 + -0.3
1,331,339 - -1.5

Or see this region's nucleotide sequence