Strain Fitness in Sinorhizobium meliloti 1021 around SMc01773

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01772 and SMc01773 are separated by 0 nucleotidesSMc01773 and SMc01774 are separated by 86 nucleotidesSMc01774 and SMc01775 are separated by 413 nucleotides SMc01772: SMc01772 - riboflavin biosynthesis protein, at 1,318,702 to 1,319,907 SMc01772 SMc01773: SMc01773 - riboflavin synthase subunit alpha, at 1,319,908 to 1,320,528 SMc01773 SMc01774: SMc01774 - hypothetical protein, at 1,320,615 to 1,320,965 SMc01774 SMc01775: SMc01775 - acetyltransferase, at 1,321,379 to 1,321,918 SMc01775 Position (kb) 1319 1320 1321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1319.901 kb on + strandat 1319.901 kb on + strandat 1319.901 kb on + strandat 1320.526 kb on + strandat 1320.625 kb on + strandat 1320.625 kb on + strandat 1320.625 kb on + strandat 1320.780 kb on - strand, within SMc01774at 1320.806 kb on + strand, within SMc01774at 1321.075 kb on - strandat 1321.297 kb on + strandat 1321.380 kb on + strandat 1321.380 kb on + strandat 1321.381 kb on - strandat 1321.381 kb on - strandat 1321.433 kb on - strand, within SMc01775at 1321.433 kb on - strand, within SMc01775at 1321.434 kb on + strand, within SMc01775at 1321.435 kb on - strand, within SMc01775at 1321.435 kb on - strand, within SMc01775

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,319,901 + -1.8
1,319,901 + +0.1
1,319,901 + -1.8
1,320,526 + -0.1
1,320,625 + -0.5
1,320,625 + -1.3
1,320,625 + +1.2
1,320,780 - SMc01774 0.47 +0.3
1,320,806 + SMc01774 0.54 +0.1
1,321,075 - -3.2
1,321,297 + +3.3
1,321,380 + +1.7
1,321,380 + -0.1
1,321,381 - -1.2
1,321,381 - +0.1
1,321,433 - SMc01775 0.10 -0.3
1,321,433 - SMc01775 0.10 -0.4
1,321,434 + SMc01775 0.10 -0.4
1,321,435 - SMc01775 0.10 -0.6
1,321,435 - SMc01775 0.10 +1.0

Or see this region's nucleotide sequence