Strain Fitness in Sinorhizobium meliloti 1021 around SMc01772

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01770 and SMc01771 are separated by 12 nucleotidesSMc01771 and SMc01772 are separated by 17 nucleotidesSMc01772 and SMc01773 are separated by 0 nucleotidesSMc01773 and SMc01774 are separated by 86 nucleotides SMc01770: SMc01770 - serine hydroxymethyltransferase, at 1,316,903 to 1,318,198 SMc01770 SMc01771: SMc01771 - transcriptional regulator NrdR, at 1,318,211 to 1,318,684 SMc01771 SMc01772: SMc01772 - riboflavin biosynthesis protein, at 1,318,702 to 1,319,907 SMc01772 SMc01773: SMc01773 - riboflavin synthase subunit alpha, at 1,319,908 to 1,320,528 SMc01773 SMc01774: SMc01774 - hypothetical protein, at 1,320,615 to 1,320,965 SMc01774 Position (kb) 1318 1319 1320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1317.938 kb on + strand, within SMc01770at 1318.184 kb on + strandat 1318.184 kb on + strandat 1318.190 kb on + strandat 1318.190 kb on + strandat 1318.190 kb on + strandat 1318.191 kb on - strandat 1318.192 kb on + strandat 1318.192 kb on + strandat 1318.223 kb on + strandat 1319.901 kb on + strandat 1319.901 kb on + strandat 1319.901 kb on + strandat 1320.526 kb on + strandat 1320.625 kb on + strandat 1320.625 kb on + strandat 1320.625 kb on + strandat 1320.780 kb on - strand, within SMc01774at 1320.806 kb on + strand, within SMc01774

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,317,938 + SMc01770 0.80 -0.9
1,318,184 + -0.1
1,318,184 + +2.3
1,318,190 + +3.2
1,318,190 + +0.8
1,318,190 + -0.9
1,318,191 - -0.7
1,318,192 + -3.1
1,318,192 + +1.2
1,318,223 + +0.9
1,319,901 + -1.8
1,319,901 + +0.1
1,319,901 + -1.8
1,320,526 + -0.1
1,320,625 + -0.5
1,320,625 + -1.3
1,320,625 + +1.2
1,320,780 - SMc01774 0.47 +0.3
1,320,806 + SMc01774 0.54 +0.1

Or see this region's nucleotide sequence