Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01729 and SMc01728 are separated by 73 nucleotides SMc01728 and SMc01727 are separated by 37 nucleotides
SMc01729: SMc01729 - hypothetical protein, at 473,140 to 474,054
SMc01729
SMc01728: SMc01728 - transcriptional regulator, at 474,128 to 475,240
SMc01728
SMc01727: SMc01727 - hypothetical protein, at 475,278 to 476,048
SMc01727
Position (kb) 474
475
476 Strain fitness (log2 ratio) -2
-1
0
1
2 at 473.139 kb on + strand at 473.139 kb on + strand at 473.140 kb on - strand at 473.344 kb on + strand, within SMc01729 at 473.345 kb on - strand, within SMc01729 at 473.440 kb on + strand, within SMc01729 at 473.716 kb on + strand, within SMc01729 at 473.773 kb on - strand, within SMc01729 at 473.773 kb on - strand, within SMc01729 at 473.819 kb on + strand, within SMc01729 at 473.819 kb on + strand, within SMc01729 at 473.820 kb on - strand, within SMc01729 at 473.820 kb on - strand, within SMc01729 at 474.018 kb on + strand at 474.019 kb on - strand at 474.076 kb on + strand at 474.077 kb on - strand at 474.077 kb on - strand at 474.117 kb on + strand at 474.117 kb on + strand at 474.117 kb on + strand at 474.118 kb on - strand at 474.155 kb on - strand at 474.162 kb on - strand at 474.295 kb on + strand, within SMc01728 at 474.873 kb on - strand, within SMc01728 at 474.943 kb on - strand, within SMc01728 at 474.943 kb on - strand, within SMc01728 at 475.239 kb on - strand at 475.239 kb on - strand at 475.275 kb on - strand at 475.275 kb on - strand at 475.275 kb on - strand at 475.345 kb on - strand at 475.542 kb on + strand, within SMc01727 at 475.813 kb on - strand, within SMc01727 at 475.910 kb on - strand, within SMc01727 at 475.910 kb on - strand, within SMc01727 at 475.910 kb on - strand, within SMc01727 at 475.975 kb on - strand at 476.034 kb on + strand at 476.122 kb on + strand at 476.188 kb on + strand at 476.188 kb on + strand at 476.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 473,139 + -0.3 473,139 + +1.6 473,140 - +0.3 473,344 + SMc01729 0.22 -0.6 473,345 - SMc01729 0.22 -1.4 473,440 + SMc01729 0.33 +0.6 473,716 + SMc01729 0.63 -0.6 473,773 - SMc01729 0.69 -1.5 473,773 - SMc01729 0.69 -0.8 473,819 + SMc01729 0.74 +0.6 473,819 + SMc01729 0.74 +0.4 473,820 - SMc01729 0.74 -1.3 473,820 - SMc01729 0.74 -0.0 474,018 + +1.0 474,019 - -1.3 474,076 + -1.0 474,077 - +0.2 474,077 - -0.7 474,117 + -1.6 474,117 + -0.1 474,117 + -0.1 474,118 - +0.5 474,155 - -0.1 474,162 - -0.1 474,295 + SMc01728 0.15 -0.2 474,873 - SMc01728 0.67 -2.2 474,943 - SMc01728 0.73 -2.5 474,943 - SMc01728 0.73 -1.2 475,239 - -2.2 475,239 - -0.4 475,275 - +0.5 475,275 - -0.2 475,275 - -2.7 475,345 - +0.4 475,542 + SMc01727 0.34 -0.3 475,813 - SMc01727 0.69 +0.2 475,910 - SMc01727 0.82 +0.2 475,910 - SMc01727 0.82 +0.7 475,910 - SMc01727 0.82 +0.7 475,975 - -0.2 476,034 + -1.1 476,122 + +2.1 476,188 + -2.2 476,188 + -2.4 476,189 - -1.8
Or see this region's nucleotide sequence