Strain Fitness in Sinorhizobium meliloti 1021 around SMc01530

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01531 and SMc01530 are separated by 249 nucleotidesSMc01530 and SMc01529 are separated by 227 nucleotidesSMc01529 and SMc01528 overlap by 4 nucleotides SMc01531: SMc01531 - 2-dehydro-3-deoxygluconokinase, at 2,601,232 to 2,602,149 SMc01531 SMc01530: SMc01530 - transposase ISRM3, at 2,602,399 to 2,603,595 SMc01530 SMc01529: SMc01529 - peptide ABC transporter ATP-binding protein, at 2,603,823 to 2,604,590 SMc01529 SMc01528: SMc01528 - peptide ABC transporter ATP-binding protein, at 2,604,587 to 2,605,420 SMc01528 Position (kb) 2602 2603 2604Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2601.494 kb on - strand, within SMc01531at 2601.494 kb on - strand, within SMc01531at 2601.494 kb on - strand, within SMc01531at 2601.495 kb on + strand, within SMc01531at 2601.496 kb on - strand, within SMc01531at 2601.496 kb on - strand, within SMc01531at 2601.496 kb on - strand, within SMc01531at 2602.084 kb on - strandat 2602.167 kb on + strandat 2602.177 kb on - strandat 2602.228 kb on + strandat 2602.228 kb on + strandat 2602.228 kb on + strandat 2602.229 kb on - strandat 2602.229 kb on - strandat 2603.715 kb on - strandat 2603.792 kb on + strandat 2603.887 kb on + strandat 2603.887 kb on + strandat 2604.359 kb on - strand, within SMc01529

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,601,494 - SMc01531 0.29 +0.0
2,601,494 - SMc01531 0.29 -2.8
2,601,494 - SMc01531 0.29 -0.7
2,601,495 + SMc01531 0.29 +0.4
2,601,496 - SMc01531 0.29 -2.7
2,601,496 - SMc01531 0.29 +0.9
2,601,496 - SMc01531 0.29 -0.2
2,602,084 - -0.6
2,602,167 + -0.4
2,602,177 - +1.7
2,602,228 + -3.2
2,602,228 + +2.1
2,602,228 + +1.7
2,602,229 - -0.0
2,602,229 - -0.3
2,603,715 - -0.2
2,603,792 + +0.3
2,603,887 + -0.1
2,603,887 + -0.3
2,604,359 - SMc01529 0.70 +0.1

Or see this region's nucleotide sequence