Strain Fitness in Sinorhizobium meliloti 1021 around SMc01369

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01370 and SMc01369 are separated by 486 nucleotidesSMc01369 and SMc01368 are separated by 94 nucleotides SMc01370: SMc01370 - response regulator PleD, at 1,410,107 to 1,411,474 SMc01370 SMc01369: SMc01369 - 50S ribosomal protein L33, at 1,411,961 to 1,412,128 SMc01369 SMc01368: SMc01368 - transport transmembrane protein, at 1,412,223 to 1,413,407 SMc01368 Position (kb) 1411 1412 1413Strain fitness (log2 ratio) -3 -2 -1 0 1at 1411.013 kb on + strand, within SMc01370at 1411.963 kb on - strandat 1412.266 kb on - strandat 1412.272 kb on + strandat 1412.454 kb on - strand, within SMc01368at 1412.456 kb on - strand, within SMc01368at 1412.456 kb on - strand, within SMc01368at 1412.526 kb on - strand, within SMc01368at 1412.579 kb on + strand, within SMc01368at 1412.785 kb on + strand, within SMc01368at 1412.786 kb on - strand, within SMc01368at 1413.104 kb on - strand, within SMc01368at 1413.104 kb on - strand, within SMc01368at 1413.104 kb on - strand, within SMc01368at 1413.106 kb on + strand, within SMc01368

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,411,013 + SMc01370 0.66 -0.5
1,411,963 - -0.1
1,412,266 - +1.4
1,412,272 + -2.8
1,412,454 - SMc01368 0.19 -1.7
1,412,456 - SMc01368 0.20 -1.9
1,412,456 - SMc01368 0.20 -0.1
1,412,526 - SMc01368 0.26 +0.5
1,412,579 + SMc01368 0.30 -0.5
1,412,785 + SMc01368 0.47 -1.3
1,412,786 - SMc01368 0.48 -0.7
1,413,104 - SMc01368 0.74 -2.3
1,413,104 - SMc01368 0.74 -0.1
1,413,104 - SMc01368 0.74 +0.9
1,413,106 + SMc01368 0.75 -0.9

Or see this region's nucleotide sequence