Strain Fitness in Sinorhizobium meliloti 1021 around SMc01314

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01315 and SMc01314 are separated by 685 nucleotidesSMc01314 and SMc01313 are separated by 57 nucleotidesSMc01313 and SMc01312 are separated by 29 nucleotides SMc01315: SMc01315 - hypothetical protein, at 1,473,193 to 1,473,489 SMc01315 SMc01314: SMc01314 - 30S ribosomal protein S12, at 1,474,175 to 1,474,546 SMc01314 SMc01313: SMc01313 - 30S ribosomal protein S7, at 1,474,604 to 1,475,074 SMc01313 SMc01312: SMc01312 - elongation factor G, at 1,475,104 to 1,477,203 SMc01312 Position (kb) 1474 1475Strain fitness (log2 ratio) -1 0 1at 1473.240 kb on - strand, within SMc01315at 1473.511 kb on + strandat 1473.511 kb on + strandat 1473.512 kb on - strandat 1473.514 kb on + strandat 1473.514 kb on + strandat 1473.631 kb on - strandat 1473.637 kb on + strandat 1473.753 kb on + strandat 1473.754 kb on - strandat 1473.768 kb on - strandat 1473.841 kb on - strandat 1473.841 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,473,240 - SMc01315 0.16 -0.5
1,473,511 + -0.3
1,473,511 + +1.4
1,473,512 - +1.1
1,473,514 + -0.1
1,473,514 + +0.8
1,473,631 - +0.2
1,473,637 + -0.4
1,473,753 + -0.5
1,473,754 - -0.6
1,473,768 - -1.2
1,473,841 - -1.0
1,473,841 - -0.9

Or see this region's nucleotide sequence