Strain Fitness in Sinorhizobium meliloti 1021 around SMc01178

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01181 and SMc01180 are separated by 47 nucleotidesSMc01180 and SMc01245 are separated by 142 nucleotidesSMc01245 and SMc01179 are separated by 77 nucleotidesSMc01179 and SMc01178 overlap by 4 nucleotidesSMc01178 and SMc01177 are separated by 76 nucleotidesSMc01177 and SMc01176 overlap by 4 nucleotidesSMc01176 and SMc01175 are separated by 193 nucleotides SMc01181: SMc01181 - transmembrane protein, at 1,751,987 to 1,752,334 SMc01181 SMc01180: SMc01180 - hypothetical protein, at 1,752,382 to 1,752,675 SMc01180 SMc01245: SMc01245 - tRNA-Asn, at 1,752,818 to 1,752,892 SMc01245 SMc01179: SMc01179 - multidrug transmembrane resistance signal peptide protein, at 1,752,970 to 1,753,314 SMc01179 SMc01178: SMc01178 - multidrug transmembrane resistance signal peptide protein, at 1,753,311 to 1,753,637 SMc01178 SMc01177: SMc01177 - hypothetical protein, at 1,753,714 to 1,754,112 SMc01177 SMc01176: SMc01176 - hypothetical protein, at 1,754,109 to 1,754,348 SMc01176 SMc01175: SMc01175 - oxidoreductase, at 1,754,542 to 1,755,390 SMc01175 Position (kb) 1753 1754Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1752.689 kb on + strandat 1752.737 kb on + strandat 1752.959 kb on + strandat 1753.060 kb on + strand, within SMc01179at 1753.060 kb on + strand, within SMc01179at 1753.061 kb on - strand, within SMc01179at 1753.081 kb on + strand, within SMc01179at 1753.081 kb on + strand, within SMc01179at 1753.081 kb on + strand, within SMc01179at 1753.081 kb on + strand, within SMc01179at 1753.082 kb on - strand, within SMc01179at 1753.082 kb on - strand, within SMc01179at 1753.082 kb on - strand, within SMc01179at 1753.082 kb on - strand, within SMc01179at 1753.082 kb on - strand, within SMc01179at 1753.102 kb on + strand, within SMc01179at 1753.102 kb on + strand, within SMc01179at 1753.102 kb on + strand, within SMc01179at 1753.103 kb on - strand, within SMc01179at 1753.103 kb on - strand, within SMc01179at 1753.151 kb on - strand, within SMc01179at 1753.151 kb on - strand, within SMc01179at 1753.184 kb on + strand, within SMc01179at 1753.500 kb on + strand, within SMc01178at 1753.501 kb on - strand, within SMc01178at 1753.723 kb on + strandat 1753.724 kb on - strandat 1753.844 kb on + strand, within SMc01177at 1753.863 kb on - strand, within SMc01177at 1753.947 kb on + strand, within SMc01177at 1753.947 kb on + strandat 1753.948 kb on - strand, within SMc01177at 1753.948 kb on - strand, within SMc01177at 1753.950 kb on - strand, within SMc01177at 1754.000 kb on + strand, within SMc01177at 1754.001 kb on - strand, within SMc01177at 1754.061 kb on + strand, within SMc01177at 1754.079 kb on - strandat 1754.147 kb on + strand, within SMc01176at 1754.147 kb on + strand, within SMc01176at 1754.230 kb on + strand, within SMc01176at 1754.231 kb on - strand, within SMc01176at 1754.231 kb on - strand, within SMc01176at 1754.246 kb on + strand, within SMc01176at 1754.360 kb on + strandat 1754.395 kb on + strandat 1754.396 kb on - strandat 1754.397 kb on + strandat 1754.398 kb on - strandat 1754.398 kb on - strandat 1754.398 kb on - strandat 1754.425 kb on + strandat 1754.425 kb on + strandat 1754.426 kb on - strandat 1754.545 kb on + strandat 1754.546 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,752,689 + -1.1
1,752,737 + +0.6
1,752,959 + -1.7
1,753,060 + SMc01179 0.26 +1.3
1,753,060 + SMc01179 0.26 +1.3
1,753,061 - SMc01179 0.26 -0.5
1,753,081 + SMc01179 0.32 +1.1
1,753,081 + SMc01179 0.32 +1.4
1,753,081 + SMc01179 0.32 +0.3
1,753,081 + SMc01179 0.32 -0.5
1,753,082 - SMc01179 0.32 +0.3
1,753,082 - SMc01179 0.32 +2.0
1,753,082 - SMc01179 0.32 +0.8
1,753,082 - SMc01179 0.32 +1.5
1,753,082 - SMc01179 0.32 +0.1
1,753,102 + SMc01179 0.38 +0.9
1,753,102 + SMc01179 0.38 -2.7
1,753,102 + SMc01179 0.38 -3.2
1,753,103 - SMc01179 0.39 -0.2
1,753,103 - SMc01179 0.39 -0.5
1,753,151 - SMc01179 0.52 -0.1
1,753,151 - SMc01179 0.52 -0.1
1,753,184 + SMc01179 0.62 +0.4
1,753,500 + SMc01178 0.58 +1.4
1,753,501 - SMc01178 0.58 -1.6
1,753,723 + -0.7
1,753,724 - +0.8
1,753,844 + SMc01177 0.33 +1.0
1,753,863 - SMc01177 0.37 -0.1
1,753,947 + SMc01177 0.58 +0.1
1,753,947 + -0.8
1,753,948 - SMc01177 0.59 -0.4
1,753,948 - SMc01177 0.59 +0.4
1,753,950 - SMc01177 0.59 +0.8
1,754,000 + SMc01177 0.72 -0.9
1,754,001 - SMc01177 0.72 +0.8
1,754,061 + SMc01177 0.87 +0.0
1,754,079 - -1.3
1,754,147 + SMc01176 0.16 +1.4
1,754,147 + SMc01176 0.16 -0.8
1,754,230 + SMc01176 0.50 +1.2
1,754,231 - SMc01176 0.51 +0.5
1,754,231 - SMc01176 0.51 -1.8
1,754,246 + SMc01176 0.57 +0.5
1,754,360 + -2.5
1,754,395 + +0.2
1,754,396 - +0.8
1,754,397 + +0.6
1,754,398 - -0.8
1,754,398 - -1.3
1,754,398 - +0.6
1,754,425 + +0.7
1,754,425 + +0.7
1,754,426 - +0.2
1,754,545 + -1.0
1,754,546 - -0.2

Or see this region's nucleotide sequence