Strain Fitness in Sinorhizobium meliloti 1021 around SMc01167

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01152 and SMc01167 are separated by 925 nucleotidesSMc01167 and SMc01151 are separated by 123 nucleotidesSMc01151 and SMc01150 overlap by 4 nucleotides SMc01152: SMc01152 - 30S ribosomal protein S20, at 398,138 to 398,404 SMc01152 SMc01167: SMc01167 - chromosomal replication initiation protein, at 399,330 to 400,853 SMc01167 SMc01151: SMc01151 - hypothetical protein, at 400,977 to 401,351 SMc01151 SMc01150: SMc01150 - hypothetical protein, at 401,348 to 402,619 SMc01150 Position (kb) 399 400 401Strain fitness (log2 ratio) -2 -1 0 1 2at 398.932 kb on + strandat 399.049 kb on + strandat 399.049 kb on + strandat 399.049 kb on + strandat 400.851 kb on + strandat 400.873 kb on + strandat 400.873 kb on + strandat 400.939 kb on + strandat 400.983 kb on + strandat 401.082 kb on + strand, within SMc01151at 401.082 kb on + strand, within SMc01151at 401.082 kb on + strand, within SMc01151at 401.083 kb on - strand, within SMc01151at 401.083 kb on - strand, within SMc01151at 401.083 kb on - strand, within SMc01151at 401.220 kb on + strand, within SMc01151at 401.220 kb on + strand, within SMc01151at 401.221 kb on - strand, within SMc01151at 401.326 kb on - strandat 401.326 kb on - strandat 401.420 kb on + strandat 401.467 kb on + strandat 401.752 kb on - strand, within SMc01150

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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398,932 + +0.9
399,049 + -2.4
399,049 + -1.9
399,049 + -2.2
400,851 + +1.0
400,873 + -0.1
400,873 + -0.8
400,939 + +0.6
400,983 + -0.2
401,082 + SMc01151 0.28 -0.1
401,082 + SMc01151 0.28 -0.3
401,082 + SMc01151 0.28 +0.3
401,083 - SMc01151 0.28 +0.1
401,083 - SMc01151 0.28 +2.0
401,083 - SMc01151 0.28 +1.0
401,220 + SMc01151 0.65 +0.7
401,220 + SMc01151 0.65 -1.8
401,221 - SMc01151 0.65 -2.0
401,326 - +0.3
401,326 - -2.3
401,420 + -2.6
401,467 + -1.7
401,752 - SMc01150 0.32 -1.3

Or see this region's nucleotide sequence