Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01123 and SMc01122 overlap by 4 nucleotides SMc01122 and SMc01121 are separated by 91 nucleotides SMc01121 and SMc01120 are separated by 52 nucleotides SMc01120 and SMc01119 are separated by 158 nucleotides
SMc01123: SMc01123 - virulence factor MviN-like protein, at 432,453 to 434,060
SMc01123
SMc01122: SMc01122 - hypothetical protein, at 434,057 to 434,446
SMc01122
SMc01121: SMc01121 - tryptophanyl-tRNA synthetase, at 434,538 to 435,602
SMc01121
SMc01120: SMc01120 - hypothetical protein, at 435,655 to 436,146
SMc01120
SMc01119: SMc01119 - hypothetical protein, at 436,305 to 436,871
SMc01119
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 434.381 kb on + strand, within SMc01122 at 434.481 kb on + strand at 435.601 kb on - strand at 435.642 kb on + strand at 435.643 kb on - strand at 435.721 kb on - strand, within SMc01120 at 435.748 kb on + strand, within SMc01120 at 435.749 kb on - strand, within SMc01120 at 435.749 kb on - strand, within SMc01120 at 435.796 kb on + strand, within SMc01120 at 435.796 kb on + strand, within SMc01120 at 435.797 kb on - strand, within SMc01120 at 435.797 kb on - strand, within SMc01120 at 436.089 kb on - strand, within SMc01120 at 436.192 kb on + strand at 436.192 kb on + strand at 436.211 kb on - strand at 436.213 kb on + strand at 436.214 kb on - strand at 436.214 kb on - strand at 436.471 kb on - strand, within SMc01119 at 436.480 kb on - strand, within SMc01119
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 434,381 + SMc01122 0.83 -2.9 434,481 + -0.4 435,601 - +0.5 435,642 + +0.3 435,643 - +5.4 435,721 - SMc01120 0.13 -0.0 435,748 + SMc01120 0.19 -0.3 435,749 - SMc01120 0.19 +2.7 435,749 - SMc01120 0.19 +3.8 435,796 + SMc01120 0.29 -0.8 435,796 + SMc01120 0.29 +1.5 435,797 - SMc01120 0.29 -0.6 435,797 - SMc01120 0.29 +2.3 436,089 - SMc01120 0.88 +1.7 436,192 + +0.9 436,192 + -0.1 436,211 - -3.6 436,213 + +2.2 436,214 - -0.0 436,214 - -0.9 436,471 - SMc01119 0.29 +0.4 436,480 - SMc01119 0.31 +0.1
Or see this region's nucleotide sequence