Strain Fitness in Sinorhizobium meliloti 1021 around SMc00985

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00986 and SMc00985 are separated by 47 nucleotidesSMc00985 and SMc00984 are separated by 47 nucleotides SMc00986: SMc00986 - hypothetical protein, at 948,959 to 951,268 SMc00986 SMc00985: SMc00985 - oxidoreductase, at 951,316 to 952,758 SMc00985 SMc00984: SMc00984 - hypothetical protein, at 952,806 to 953,780 SMc00984 Position (kb) 951 952 953Strain fitness (log2 ratio) -3 -2 -1 0 1at 950.378 kb on + strand, within SMc00986at 950.378 kb on + strand, within SMc00986at 950.379 kb on - strand, within SMc00986at 950.379 kb on - strand, within SMc00986at 950.379 kb on - strand, within SMc00986at 950.380 kb on + strand, within SMc00986at 950.381 kb on - strand, within SMc00986at 950.381 kb on - strand, within SMc00986at 950.381 kb on - strand, within SMc00986at 950.399 kb on + strand, within SMc00986at 950.400 kb on - strand, within SMc00986at 950.501 kb on + strand, within SMc00986at 950.501 kb on + strand, within SMc00986at 950.501 kb on + strand, within SMc00986at 950.501 kb on + strand, within SMc00986at 950.502 kb on - strand, within SMc00986at 950.567 kb on + strand, within SMc00986at 950.567 kb on + strand, within SMc00986at 950.570 kb on + strand, within SMc00986at 950.570 kb on + strand, within SMc00986at 950.572 kb on + strand, within SMc00986at 950.573 kb on - strand, within SMc00986at 950.760 kb on - strand, within SMc00986at 950.760 kb on - strand, within SMc00986at 950.760 kb on - strand, within SMc00986at 950.760 kb on - strand, within SMc00986at 950.867 kb on + strand, within SMc00986at 950.967 kb on - strand, within SMc00986at 951.146 kb on + strandat 951.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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950,378 + SMc00986 0.61 -2.8
950,378 + SMc00986 0.61 -0.2
950,379 - SMc00986 0.61 -0.8
950,379 - SMc00986 0.61 +0.8
950,379 - SMc00986 0.61 -0.5
950,380 + SMc00986 0.62 +1.2
950,381 - SMc00986 0.62 -0.7
950,381 - SMc00986 0.62 -0.5
950,381 - SMc00986 0.62 +0.5
950,399 + SMc00986 0.62 -0.9
950,400 - SMc00986 0.62 -0.3
950,501 + SMc00986 0.67 +0.1
950,501 + SMc00986 0.67 -0.4
950,501 + SMc00986 0.67 -1.5
950,501 + SMc00986 0.67 +1.1
950,502 - SMc00986 0.67 +1.7
950,567 + SMc00986 0.70 -0.3
950,567 + SMc00986 0.70 -1.0
950,570 + SMc00986 0.70 -0.6
950,570 + SMc00986 0.70 -0.1
950,572 + SMc00986 0.70 +0.5
950,573 - SMc00986 0.70 +0.3
950,760 - SMc00986 0.78 +0.1
950,760 - SMc00986 0.78 -3.0
950,760 - SMc00986 0.78 -1.0
950,760 - SMc00986 0.78 +1.0
950,867 + SMc00986 0.83 -1.4
950,967 - SMc00986 0.87 -0.0
951,146 + -1.0
951,318 - +0.2

Or see this region's nucleotide sequence