Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00881 and SMc00880 overlap by 4 nucleotides SMc00880 and SMc00879 are separated by 125 nucleotides SMc00879 and SMc00878 are separated by 227 nucleotides
SMc00881: SMc00881 - 2-dehydro-3-deoxygalactonokinase, at 905,344 to 906,264
SMc00881
SMc00880: SMc00880 - oxidoreductase, at 906,261 to 907,031
SMc00880
SMc00879: SMc00879 - transcriptional regulator, at 907,157 to 908,011
SMc00879
SMc00878: SMc00878 - transcriptional regulator, at 908,239 to 908,979
SMc00878
Position (kb) 907
908
909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 906.245 kb on + strand at 906.249 kb on - strand at 906.476 kb on + strand, within SMc00880 at 906.477 kb on - strand, within SMc00880 at 906.564 kb on - strand, within SMc00880 at 906.957 kb on + strand at 907.122 kb on - strand at 907.122 kb on - strand at 907.134 kb on + strand at 907.278 kb on + strand, within SMc00879 at 907.278 kb on + strand, within SMc00879 at 907.279 kb on - strand, within SMc00879 at 907.374 kb on - strand, within SMc00879 at 907.451 kb on + strand, within SMc00879 at 907.524 kb on - strand, within SMc00879 at 907.559 kb on - strand, within SMc00879 at 907.559 kb on - strand, within SMc00879 at 907.593 kb on - strand, within SMc00879 at 907.725 kb on + strand, within SMc00879 at 907.726 kb on - strand, within SMc00879 at 907.856 kb on + strand, within SMc00879 at 907.857 kb on - strand, within SMc00879 at 907.857 kb on - strand, within SMc00879 at 908.025 kb on + strand at 908.025 kb on - strand at 908.070 kb on - strand at 908.106 kb on + strand at 908.106 kb on + strand at 908.106 kb on + strand at 908.106 kb on + strand at 908.106 kb on + strand at 908.106 kb on + strand at 908.107 kb on - strand at 908.107 kb on - strand at 908.107 kb on - strand at 908.110 kb on + strand at 908.181 kb on + strand at 908.182 kb on - strand at 908.259 kb on + strand at 908.259 kb on + strand at 908.260 kb on - strand at 908.260 kb on - strand at 908.260 kb on - strand at 908.260 kb on - strand at 908.261 kb on + strand at 908.261 kb on + strand at 908.261 kb on + strand at 908.261 kb on + strand at 908.261 kb on + strand at 908.262 kb on - strand at 908.533 kb on + strand, within SMc00878 at 908.533 kb on + strand, within SMc00878 at 908.533 kb on + strand, within SMc00878 at 908.588 kb on + strand, within SMc00878 at 908.588 kb on + strand, within SMc00878 at 908.588 kb on + strand, within SMc00878 at 908.589 kb on - strand, within SMc00878 at 908.589 kb on - strand, within SMc00878 at 908.589 kb on - strand, within SMc00878 at 908.589 kb on - strand, within SMc00878 at 908.627 kb on - strand, within SMc00878 at 908.627 kb on - strand, within SMc00878 at 908.738 kb on + strand, within SMc00878 at 908.738 kb on + strand, within SMc00878 at 908.738 kb on + strand, within SMc00878 at 908.738 kb on + strand at 908.738 kb on + strand, within SMc00878 at 908.738 kb on + strand, within SMc00878 at 908.739 kb on - strand, within SMc00878 at 908.739 kb on - strand, within SMc00878 at 908.739 kb on - strand, within SMc00878 at 908.739 kb on - strand, within SMc00878 at 908.739 kb on - strand, within SMc00878 at 908.740 kb on + strand, within SMc00878 at 908.741 kb on - strand, within SMc00878 at 908.741 kb on - strand, within SMc00878 at 908.879 kb on - strand, within SMc00878 at 908.880 kb on + strand, within SMc00878 at 908.880 kb on + strand, within SMc00878 at 908.881 kb on - strand, within SMc00878 at 908.893 kb on + strand, within SMc00878 at 908.894 kb on - strand, within SMc00878 at 908.957 kb on + strand at 908.957 kb on + strand at 908.958 kb on - strand at 908.997 kb on + strand at 908.997 kb on + strand at 908.998 kb on - strand at 908.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 906,245 + -0.2 906,249 - +3.4 906,476 + SMc00880 0.28 +0.7 906,477 - SMc00880 0.28 +1.9 906,564 - SMc00880 0.39 +0.6 906,957 + -0.3 907,122 - -0.9 907,122 - -0.3 907,134 + -2.5 907,278 + SMc00879 0.14 -2.3 907,278 + SMc00879 0.14 -1.4 907,279 - SMc00879 0.14 -1.4 907,374 - SMc00879 0.25 +0.1 907,451 + SMc00879 0.34 -0.8 907,524 - SMc00879 0.43 +0.4 907,559 - SMc00879 0.47 +0.5 907,559 - SMc00879 0.47 +2.1 907,593 - SMc00879 0.51 +0.1 907,725 + SMc00879 0.66 +0.5 907,726 - SMc00879 0.67 -3.2 907,856 + SMc00879 0.82 -1.9 907,857 - SMc00879 0.82 +1.6 907,857 - SMc00879 0.82 -3.6 908,025 + +0.4 908,025 - -2.1 908,070 - +0.5 908,106 + +0.7 908,106 + +0.5 908,106 + -1.3 908,106 + +0.0 908,106 + -0.3 908,106 + +0.2 908,107 - +0.8 908,107 - +0.3 908,107 - +0.2 908,110 + +0.3 908,181 + -3.0 908,182 - +1.4 908,259 + +0.5 908,259 + -2.3 908,260 - +0.7 908,260 - +1.5 908,260 - +1.0 908,260 - +0.7 908,261 + -0.1 908,261 + -0.5 908,261 + -2.1 908,261 + +1.9 908,261 + +3.9 908,262 - +0.1 908,533 + SMc00878 0.40 +1.8 908,533 + SMc00878 0.40 -1.2 908,533 + SMc00878 0.40 -0.8 908,588 + SMc00878 0.47 +0.2 908,588 + SMc00878 0.47 +0.3 908,588 + SMc00878 0.47 +0.4 908,589 - SMc00878 0.47 -0.2 908,589 - SMc00878 0.47 +0.5 908,589 - SMc00878 0.47 +1.2 908,589 - SMc00878 0.47 +1.0 908,627 - SMc00878 0.52 +0.2 908,627 - SMc00878 0.52 -1.6 908,738 + SMc00878 0.67 +0.3 908,738 + SMc00878 0.67 -0.6 908,738 + SMc00878 0.67 +0.8 908,738 + -0.5 908,738 + SMc00878 0.67 +0.9 908,738 + SMc00878 0.67 +0.2 908,739 - SMc00878 0.67 +0.6 908,739 - SMc00878 0.67 +0.4 908,739 - SMc00878 0.67 +0.4 908,739 - SMc00878 0.67 -1.1 908,739 - SMc00878 0.67 +0.8 908,740 + SMc00878 0.68 +0.3 908,741 - SMc00878 0.68 +1.1 908,741 - SMc00878 0.68 +0.3 908,879 - SMc00878 0.86 -0.7 908,880 + SMc00878 0.87 +0.0 908,880 + SMc00878 0.87 -0.2 908,881 - SMc00878 0.87 -2.5 908,893 + SMc00878 0.88 +0.5 908,894 - SMc00878 0.88 -0.5 908,957 + +0.7 908,957 + +0.2 908,958 - +0.9 908,997 + -1.4 908,997 + +0.6 908,998 - +0.1 908,998 - -0.8
Or see this region's nucleotide sequence