Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00824 and SMc00825 are separated by 136 nucleotides SMc00825 and SMc00826 are separated by 137 nucleotides SMc00826 and SMc00827 are separated by 16 nucleotides
SMc00824: SMc00824 - hypothetical protein, at 844,367 to 845,200
SMc00824
SMc00825: SMc00825 - glutamate--cysteine ligase precursor protein, at 845,337 to 846,710
SMc00825
SMc00826: SMc00826 - 16S ribosomal RNA methyltransferase RsmE, at 846,848 to 847,585
SMc00826
SMc00827: SMc00827 - transport transmembrane protein, at 847,602 to 849,146
SMc00827
Position (kb) 845
846
847 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 844.368 kb on + strand at 844.845 kb on + strand, within SMc00824 at 844.845 kb on + strand, within SMc00824 at 844.989 kb on + strand, within SMc00824 at 844.998 kb on + strand, within SMc00824 at 844.998 kb on + strand, within SMc00824 at 844.998 kb on + strand, within SMc00824 at 845.053 kb on + strand, within SMc00824 at 845.053 kb on + strand, within SMc00824 at 845.053 kb on + strand, within SMc00824 at 845.054 kb on - strand, within SMc00824 at 845.238 kb on + strand at 845.239 kb on - strand at 845.239 kb on - strand at 845.239 kb on - strand at 845.341 kb on + strand at 845.342 kb on - strand at 845.348 kb on - strand at 847.310 kb on + strand, within SMc00826 at 847.412 kb on + strand, within SMc00826 at 847.413 kb on - strand, within SMc00826 at 847.413 kb on - strand, within SMc00826 at 847.413 kb on - strand at 847.494 kb on + strand, within SMc00826 at 847.495 kb on - strand, within SMc00826 at 847.495 kb on - strand, within SMc00826 at 847.597 kb on - strand at 847.630 kb on + strand at 847.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 844,368 + +1.7 844,845 + SMc00824 0.57 +0.5 844,845 + SMc00824 0.57 -0.5 844,989 + SMc00824 0.75 -0.2 844,998 + SMc00824 0.76 +0.3 844,998 + SMc00824 0.76 -0.5 844,998 + SMc00824 0.76 -0.0 845,053 + SMc00824 0.82 -0.6 845,053 + SMc00824 0.82 +0.3 845,053 + SMc00824 0.82 +0.2 845,054 - SMc00824 0.82 -1.3 845,238 + -0.5 845,239 - -1.5 845,239 - +0.4 845,239 - -3.3 845,341 + -1.6 845,342 - -3.5 845,348 - -0.1 847,310 + SMc00826 0.63 +0.0 847,412 + SMc00826 0.76 -3.0 847,413 - SMc00826 0.77 -0.2 847,413 - SMc00826 0.77 +1.5 847,413 - +2.1 847,494 + SMc00826 0.88 -0.1 847,495 - SMc00826 0.88 +0.1 847,495 - SMc00826 0.88 +0.4 847,597 - +0.1 847,630 + -2.2 847,631 - -0.5
Or see this region's nucleotide sequence