Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00789 and SMc00790 overlap by 4 nucleotides SMc00790 and SMc00791 are separated by 64 nucleotides SMc00791 and SMc00792 are separated by 152 nucleotides SMc00792 and SMc00793 are separated by 101 nucleotides
SMc00789: SMc00789 - peptide ABC transporter ATP-binding protein, at 811,111 to 811,965
SMc00789
SMc00790: SMc00790 - peptide ABC transporter ATP-binding protein, at 811,962 to 812,789
SMc00790
SMc00791: SMc00791 - hypothetical protein, at 812,854 to 813,198
SMc00791
SMc00792: SMc00792 - hypothetical protein, at 813,351 to 813,521
SMc00792
SMc00793: SMc00793 - permease, at 813,623 to 814,753
SMc00793
Position (kb) 812
813
814 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 811.855 kb on + strand, within SMc00789 at 812.001 kb on + strand at 812.059 kb on + strand, within SMc00790 at 812.059 kb on + strand, within SMc00790 at 812.123 kb on + strand, within SMc00790 at 812.124 kb on - strand, within SMc00790 at 812.124 kb on - strand, within SMc00790 at 812.400 kb on + strand, within SMc00790 at 812.400 kb on + strand, within SMc00790 at 812.524 kb on + strand, within SMc00790 at 812.525 kb on - strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.632 kb on + strand, within SMc00790 at 812.632 kb on + strand, within SMc00790 at 812.633 kb on - strand, within SMc00790 at 812.643 kb on + strand, within SMc00790 at 812.643 kb on + strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.664 kb on + strand, within SMc00790 at 812.665 kb on - strand, within SMc00790 at 812.707 kb on - strand at 812.708 kb on + strand at 812.708 kb on + strand at 812.708 kb on + strand at 812.709 kb on - strand at 812.709 kb on - strand at 812.797 kb on + strand at 812.797 kb on + strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.801 kb on + strand at 812.801 kb on + strand at 812.838 kb on + strand at 812.839 kb on - strand at 812.905 kb on + strand, within SMc00791 at 812.905 kb on + strand, within SMc00791 at 813.164 kb on - strand at 813.218 kb on + strand at 813.219 kb on - strand at 813.219 kb on - strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.278 kb on - strand at 813.321 kb on - strand at 813.357 kb on + strand at 813.401 kb on - strand, within SMc00792 at 813.401 kb on - strand, within SMc00792 at 813.401 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.615 kb on - strand at 813.794 kb on + strand, within SMc00793 at 813.794 kb on + strand, within SMc00793 at 813.795 kb on - strand at 813.797 kb on - strand, within SMc00793 at 813.797 kb on - strand, within SMc00793 at 813.797 kb on - strand, within SMc00793 at 813.922 kb on - strand, within SMc00793 at 814.026 kb on + strand, within SMc00793 at 814.035 kb on - strand, within SMc00793 at 814.063 kb on - strand, within SMc00793 at 814.063 kb on - strand, within SMc00793 at 814.197 kb on + strand, within SMc00793 at 814.198 kb on - strand, within SMc00793
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 811,855 + SMc00789 0.87 +0.1 812,001 + +1.4 812,059 + SMc00790 0.12 +0.1 812,059 + SMc00790 0.12 +1.3 812,123 + SMc00790 0.19 +0.4 812,124 - SMc00790 0.20 -0.1 812,124 - SMc00790 0.20 +0.2 812,400 + SMc00790 0.53 +1.1 812,400 + SMc00790 0.53 -0.9 812,524 + SMc00790 0.68 +1.2 812,525 - SMc00790 0.68 +1.3 812,580 + SMc00790 0.75 +0.5 812,580 + SMc00790 0.75 -0.7 812,580 + SMc00790 0.75 +0.7 812,581 - SMc00790 0.75 +0.8 812,581 - SMc00790 0.75 -3.3 812,581 - SMc00790 0.75 -0.1 812,581 - SMc00790 0.75 -0.7 812,581 - SMc00790 0.75 +0.9 812,581 - SMc00790 0.75 -1.2 812,616 + SMc00790 0.79 -2.2 812,616 + SMc00790 0.79 +0.5 812,616 + SMc00790 0.79 +0.0 812,632 + SMc00790 0.81 -1.8 812,632 + SMc00790 0.81 +1.0 812,633 - SMc00790 0.81 +0.8 812,643 + SMc00790 0.82 -0.4 812,643 + SMc00790 0.82 +3.0 812,644 - SMc00790 0.82 -1.2 812,644 - SMc00790 0.82 +0.4 812,644 - SMc00790 0.82 +1.7 812,664 + SMc00790 0.85 +0.0 812,665 - SMc00790 0.85 +0.2 812,707 - +0.7 812,708 + +0.3 812,708 + -0.9 812,708 + +0.4 812,709 - +0.8 812,709 - +3.1 812,797 + +2.7 812,797 + +0.1 812,798 - +1.2 812,798 - +2.1 812,798 - -1.8 812,798 - -0.3 812,798 - -1.4 812,801 + -0.1 812,801 + +0.0 812,838 + +1.3 812,839 - +0.2 812,905 + SMc00791 0.15 +1.0 812,905 + SMc00791 0.15 +0.3 813,164 - -0.9 813,218 + -3.2 813,219 - -1.6 813,219 - -0.7 813,220 + +0.0 813,220 + -2.2 813,220 + -1.9 813,220 + +0.8 813,220 + -0.4 813,221 - -1.9 813,221 - -1.6 813,221 - +1.5 813,221 - +2.3 813,278 - -1.6 813,321 - +0.3 813,357 + -1.6 813,401 - SMc00792 0.29 -0.8 813,401 - SMc00792 0.29 -0.2 813,401 - SMc00792 0.29 -2.0 813,445 - SMc00792 0.55 +0.5 813,445 - SMc00792 0.55 -1.0 813,445 - SMc00792 0.55 -1.1 813,614 + -0.3 813,614 + -1.5 813,614 + -0.7 813,614 + +0.2 813,614 + -4.5 813,615 - -0.2 813,794 + SMc00793 0.15 -0.5 813,794 + SMc00793 0.15 +0.6 813,795 - +4.4 813,797 - SMc00793 0.15 -1.7 813,797 - SMc00793 0.15 -2.5 813,797 - SMc00793 0.15 -1.9 813,922 - SMc00793 0.26 -2.0 814,026 + SMc00793 0.36 +1.6 814,035 - SMc00793 0.36 -0.4 814,063 - SMc00793 0.39 +0.1 814,063 - SMc00793 0.39 +0.7 814,197 + SMc00793 0.51 +0.7 814,198 - SMc00793 0.51 -0.0
Or see this region's nucleotide sequence