Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00763 and SMc00764 are separated by 270 nucleotides SMc00764 and SMc00765 are separated by 329 nucleotides SMc00765 and SMc00766 are separated by 348 nucleotides
SMc00763: SMc00763 - hypothetical protein, at 773,789 to 774,973
SMc00763
SMc00764: SMc00764 - hypothetical protein, at 775,244 to 775,384
SMc00764
SMc00765: SMc00765 - methyl-accepting chemotaxis protein, at 775,714 to 778,239
SMc00765
SMc00766: SMc00766 - transcriptional regulator, at 778,588 to 779,463
SMc00766
Position (kb) 775
776
777
778
779 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 774.875 kb on + strand at 774.876 kb on - strand at 774.920 kb on + strand at 775.015 kb on - strand at 775.024 kb on + strand at 775.025 kb on - strand at 775.037 kb on + strand at 775.037 kb on + strand at 775.037 kb on + strand at 775.145 kb on - strand at 775.275 kb on + strand, within SMc00764 at 775.276 kb on - strand, within SMc00764 at 775.276 kb on - strand, within SMc00764 at 775.325 kb on + strand, within SMc00764 at 775.325 kb on + strand, within SMc00764 at 775.325 kb on + strand, within SMc00764 at 775.428 kb on + strand at 775.470 kb on - strand at 775.487 kb on - strand at 775.730 kb on + strand at 775.731 kb on - strand at 775.731 kb on - strand at 775.820 kb on - strand at 775.897 kb on + strand at 775.898 kb on - strand at 775.898 kb on - strand at 775.898 kb on - strand at 775.898 kb on - strand at 775.898 kb on - strand at 776.303 kb on + strand, within SMc00765 at 776.354 kb on + strand, within SMc00765 at 776.497 kb on + strand, within SMc00765 at 776.498 kb on - strand, within SMc00765 at 776.498 kb on - strand, within SMc00765 at 776.498 kb on - strand, within SMc00765 at 776.573 kb on + strand, within SMc00765 at 776.573 kb on + strand, within SMc00765 at 776.573 kb on + strand, within SMc00765 at 776.574 kb on - strand, within SMc00765 at 776.574 kb on - strand, within SMc00765 at 776.574 kb on - strand, within SMc00765 at 777.118 kb on - strand, within SMc00765 at 777.642 kb on + strand, within SMc00765 at 777.642 kb on + strand, within SMc00765 at 777.642 kb on + strand, within SMc00765 at 777.642 kb on + strand, within SMc00765 at 777.643 kb on - strand, within SMc00765 at 777.643 kb on - strand, within SMc00765 at 777.756 kb on + strand, within SMc00765 at 778.237 kb on + strand at 778.492 kb on + strand at 778.493 kb on - strand at 778.493 kb on - strand at 778.493 kb on - strand at 778.613 kb on - strand at 779.038 kb on + strand, within SMc00766 at 779.039 kb on - strand, within SMc00766 at 779.072 kb on - strand, within SMc00766 at 779.072 kb on - strand, within SMc00766 at 779.072 kb on - strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.143 kb on - strand, within SMc00766 at 779.144 kb on + strand, within SMc00766 at 779.144 kb on + strand, within SMc00766
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 774,875 + +1.0 774,876 - +1.0 774,920 + +0.4 775,015 - -1.1 775,024 + +0.5 775,025 - +1.0 775,037 + -0.3 775,037 + +0.6 775,037 + +1.6 775,145 - -0.2 775,275 + SMc00764 0.22 +0.3 775,276 - SMc00764 0.23 -0.7 775,276 - SMc00764 0.23 +1.1 775,325 + SMc00764 0.57 -0.2 775,325 + SMc00764 0.57 +0.3 775,325 + SMc00764 0.57 +0.5 775,428 + +1.3 775,470 - +2.8 775,487 - -0.3 775,730 + +0.5 775,731 - +0.1 775,731 - +0.2 775,820 - +0.1 775,897 + +0.4 775,898 - +1.0 775,898 - +0.4 775,898 - -0.8 775,898 - +0.5 775,898 - +3.1 776,303 + SMc00765 0.23 -0.6 776,354 + SMc00765 0.25 +0.4 776,497 + SMc00765 0.31 -0.5 776,498 - SMc00765 0.31 -1.6 776,498 - SMc00765 0.31 +1.6 776,498 - SMc00765 0.31 +0.8 776,573 + SMc00765 0.34 -1.0 776,573 + SMc00765 0.34 -0.8 776,573 + SMc00765 0.34 +0.5 776,574 - SMc00765 0.34 +1.0 776,574 - SMc00765 0.34 -0.2 776,574 - SMc00765 0.34 -0.1 777,118 - SMc00765 0.56 +0.3 777,642 + SMc00765 0.76 -1.5 777,642 + SMc00765 0.76 -0.0 777,642 + SMc00765 0.76 -0.4 777,642 + SMc00765 0.76 -0.5 777,643 - SMc00765 0.76 -2.1 777,643 - SMc00765 0.76 -1.3 777,756 + SMc00765 0.81 -0.4 778,237 + +1.9 778,492 + -0.5 778,493 - -1.2 778,493 - -0.4 778,493 - +2.9 778,613 - -4.0 779,038 + SMc00766 0.51 +0.5 779,039 - SMc00766 0.51 -0.2 779,072 - SMc00766 0.55 -2.6 779,072 - SMc00766 0.55 -0.3 779,072 - SMc00766 0.55 +0.1 779,142 + SMc00766 0.63 +0.3 779,142 + SMc00766 0.63 +0.3 779,142 + SMc00766 0.63 +0.5 779,142 + SMc00766 0.63 +0.5 779,143 - SMc00766 0.63 -1.0 779,144 + SMc00766 0.63 +0.3 779,144 + SMc00766 0.63 -0.1
Or see this region's nucleotide sequence