Strain Fitness in Sinorhizobium meliloti 1021 around SMc00714

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00716 and SMc00715 are separated by 105 nucleotidesSMc00715 and SMc00714 are separated by 101 nucleotidesSMc00714 and SMc00713 are separated by 9 nucleotidesSMc00713 and SMc00712 are separated by 304 nucleotides SMc00716: SMc00716 - hypothetical protein, at 2,864,353 to 2,865,369 SMc00716 SMc00715: SMc00715 - hypothetical protein, at 2,865,475 to 2,866,173 SMc00715 SMc00714: SMc00714 - 1-acyl-SN-glycerol-3-phosphate acyltransferase (PLSC) protein, at 2,866,275 to 2,867,057 SMc00714 SMc00713: SMc00713 - cation transport protein, at 2,867,067 to 2,867,621 SMc00713 SMc00712: SMc00712 - hypothetical protein, at 2,867,926 to 2,868,939 SMc00712 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -1 0 1 2at 2865.407 kb on + strandat 2865.461 kb on + strandat 2865.853 kb on - strand, within SMc00715at 2866.152 kb on + strandat 2866.152 kb on + strandat 2866.171 kb on + strandat 2866.171 kb on + strandat 2866.182 kb on + strandat 2866.182 kb on + strandat 2866.183 kb on - strandat 2866.183 kb on - strandat 2866.224 kb on + strandat 2867.165 kb on + strand, within SMc00713at 2867.281 kb on + strand, within SMc00713at 2867.281 kb on + strand, within SMc00713at 2867.320 kb on - strand, within SMc00713at 2867.320 kb on - strand, within SMc00713at 2867.341 kb on + strand, within SMc00713at 2867.341 kb on + strand, within SMc00713at 2867.342 kb on - strand, within SMc00713at 2867.440 kb on + strand, within SMc00713at 2867.609 kb on + strandat 2867.610 kb on - strandat 2867.687 kb on + strandat 2867.700 kb on + strandat 2867.707 kb on + strandat 2867.707 kb on + strandat 2867.811 kb on - strandat 2867.916 kb on - strandat 2867.992 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,865,407 + -1.1
2,865,461 + +0.5
2,865,853 - SMc00715 0.54 -1.3
2,866,152 + +1.0
2,866,152 + +1.3
2,866,171 + -1.3
2,866,171 + -0.8
2,866,182 + +0.7
2,866,182 + -0.1
2,866,183 - +0.3
2,866,183 - +2.4
2,866,224 + +1.2
2,867,165 + SMc00713 0.18 +1.8
2,867,281 + SMc00713 0.39 +2.2
2,867,281 + SMc00713 0.39 -0.3
2,867,320 - SMc00713 0.46 +0.1
2,867,320 - SMc00713 0.46 +1.2
2,867,341 + SMc00713 0.49 +0.3
2,867,341 + SMc00713 0.49 +1.2
2,867,342 - SMc00713 0.50 -0.4
2,867,440 + SMc00713 0.67 +0.3
2,867,609 + +1.3
2,867,610 - +2.4
2,867,687 + +1.0
2,867,700 + +0.3
2,867,707 + +0.6
2,867,707 + +1.2
2,867,811 - +0.5
2,867,916 - +0.0
2,867,992 - +0.6

Or see this region's nucleotide sequence