Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00716 and SMc00715 are separated by 105 nucleotides SMc00715 and SMc00714 are separated by 101 nucleotides SMc00714 and SMc00713 are separated by 9 nucleotides SMc00713 and SMc00712 are separated by 304 nucleotides
SMc00716: SMc00716 - hypothetical protein, at 2,864,353 to 2,865,369
SMc00716
SMc00715: SMc00715 - hypothetical protein, at 2,865,475 to 2,866,173
SMc00715
SMc00714: SMc00714 - 1-acyl-SN-glycerol-3-phosphate acyltransferase (PLSC) protein, at 2,866,275 to 2,867,057
SMc00714
SMc00713: SMc00713 - cation transport protein, at 2,867,067 to 2,867,621
SMc00713
SMc00712: SMc00712 - hypothetical protein, at 2,867,926 to 2,868,939
SMc00712
Position (kb)
2866
2867
2868 Strain fitness (log2 ratio)
-1
0
1
2 at 2865.407 kb on + strand at 2865.461 kb on + strand at 2865.853 kb on - strand, within SMc00715 at 2866.152 kb on + strand at 2866.152 kb on + strand at 2866.171 kb on + strand at 2866.171 kb on + strand at 2866.182 kb on + strand at 2866.182 kb on + strand at 2866.183 kb on - strand at 2866.183 kb on - strand at 2866.224 kb on + strand at 2867.165 kb on + strand, within SMc00713 at 2867.281 kb on + strand, within SMc00713 at 2867.281 kb on + strand, within SMc00713 at 2867.320 kb on - strand, within SMc00713 at 2867.320 kb on - strand, within SMc00713 at 2867.341 kb on + strand, within SMc00713 at 2867.341 kb on + strand, within SMc00713 at 2867.342 kb on - strand, within SMc00713 at 2867.440 kb on + strand, within SMc00713 at 2867.609 kb on + strand at 2867.610 kb on - strand at 2867.687 kb on + strand at 2867.700 kb on + strand at 2867.707 kb on + strand at 2867.707 kb on + strand at 2867.811 kb on - strand at 2867.916 kb on - strand at 2867.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 2,865,407 + -1.1 2,865,461 + +0.5 2,865,853 - SMc00715 0.54 -1.3 2,866,152 + +1.0 2,866,152 + +1.3 2,866,171 + -1.3 2,866,171 + -0.8 2,866,182 + +0.7 2,866,182 + -0.1 2,866,183 - +0.3 2,866,183 - +2.4 2,866,224 + +1.2 2,867,165 + SMc00713 0.18 +1.8 2,867,281 + SMc00713 0.39 +2.2 2,867,281 + SMc00713 0.39 -0.3 2,867,320 - SMc00713 0.46 +0.1 2,867,320 - SMc00713 0.46 +1.2 2,867,341 + SMc00713 0.49 +0.3 2,867,341 + SMc00713 0.49 +1.2 2,867,342 - SMc00713 0.50 -0.4 2,867,440 + SMc00713 0.67 +0.3 2,867,609 + +1.3 2,867,610 - +2.4 2,867,687 + +1.0 2,867,700 + +0.3 2,867,707 + +0.6 2,867,707 + +1.2 2,867,811 - +0.5 2,867,916 - +0.0 2,867,992 - +0.6
Or see this region's nucleotide sequence