Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00598 and SMc00599 are separated by 132 nucleotides SMc00599 and SMc00600 are separated by 4 nucleotides SMc00600 and SMc00601 overlap by 4 nucleotides SMc00601 and SMc00602 are separated by 234 nucleotides
SMc00598: SMc00598 - branched chain amino acid ABC transporter permease, at 1,269,729 to 1,270,625
SMc00598
SMc00599: SMc00599 - molybdopterin MPT converting factor subunit 2, at 1,270,758 to 1,271,225
SMc00599
SMc00600: SMc00600 - molybdopterin MPT converting factor subunit 1, at 1,271,230 to 1,271,490
SMc00600
SMc00601: SMc00601 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,271,487 to 1,272,074
SMc00601
SMc00602: SMc00602 - excinuclease ABC subunit C, at 1,272,309 to 1,274,333
SMc00602
Position (kb)
1271
1272
1273 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1270.536 kb on + strand at 1270.537 kb on - strand at 1270.946 kb on + strand, within SMc00599 at 1271.028 kb on + strand, within SMc00599 at 1271.028 kb on + strand, within SMc00599 at 1271.062 kb on + strand, within SMc00599 at 1271.062 kb on + strand, within SMc00599 at 1271.063 kb on - strand, within SMc00599 at 1271.354 kb on + strand, within SMc00600 at 1271.354 kb on + strand, within SMc00600 at 1271.355 kb on - strand, within SMc00600 at 1271.355 kb on - strand, within SMc00600 at 1271.355 kb on - strand, within SMc00600 at 1271.469 kb on - strand at 1272.263 kb on + strand at 1272.264 kb on - strand at 1272.264 kb on - strand at 1272.264 kb on - strand at 1272.341 kb on - strand at 1272.986 kb on + strand, within SMc00602
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,270,536 + -0.2 1,270,537 - -2.5 1,270,946 + SMc00599 0.40 +0.6 1,271,028 + SMc00599 0.58 +0.2 1,271,028 + SMc00599 0.58 -0.7 1,271,062 + SMc00599 0.65 -0.6 1,271,062 + SMc00599 0.65 -0.4 1,271,063 - SMc00599 0.65 +0.5 1,271,354 + SMc00600 0.48 -0.1 1,271,354 + SMc00600 0.48 -1.5 1,271,355 - SMc00600 0.48 -0.2 1,271,355 - SMc00600 0.48 +0.0 1,271,355 - SMc00600 0.48 +2.2 1,271,469 - +0.9 1,272,263 + +0.1 1,272,264 - -3.3 1,272,264 - +2.1 1,272,264 - -0.0 1,272,341 - -3.8 1,272,986 + SMc00602 0.33 -2.3
Or see this region's nucleotide sequence