Strain Fitness in Sinorhizobium meliloti 1021 around SMc00569

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00567 and SMc00568 are separated by 25 nucleotidesSMc00568 and SMc00569 are separated by 343 nucleotidesSMc00569 and SMc00570 are separated by 26 nucleotides SMc00567: SMc00567 - 30S ribosomal protein S18, at 1,237,866 to 1,238,114 SMc00567 SMc00568: SMc00568 - 30S ribosomal protein S6, at 1,238,140 to 1,238,589 SMc00568 SMc00569: SMc00569 - hypothetical protein, at 1,238,933 to 1,239,265 SMc00569 SMc00570: SMc00570 - oxidoreductase, at 1,239,292 to 1,240,335 SMc00570 Position (kb) 1238 1239 1240Strain fitness (log2 ratio) -1 0 1 2at 1239.043 kb on + strand, within SMc00569at 1239.044 kb on - strand, within SMc00569at 1239.044 kb on - strand, within SMc00569at 1239.501 kb on - strand, within SMc00570at 1239.596 kb on + strand, within SMc00570at 1239.632 kb on + strand, within SMc00570at 1239.686 kb on + strand, within SMc00570at 1239.687 kb on - strand, within SMc00570at 1239.707 kb on + strand, within SMc00570at 1239.708 kb on - strand, within SMc00570at 1239.744 kb on - strand, within SMc00570at 1239.744 kb on - strand, within SMc00570at 1239.902 kb on + strand, within SMc00570at 1239.903 kb on - strand, within SMc00570at 1239.903 kb on - strand, within SMc00570at 1239.903 kb on - strand, within SMc00570at 1239.926 kb on + strand, within SMc00570at 1239.926 kb on + strand, within SMc00570at 1239.957 kb on - strand, within SMc00570at 1239.968 kb on + strand, within SMc00570at 1239.968 kb on + strand, within SMc00570at 1239.969 kb on - strand, within SMc00570at 1239.969 kb on - strand, within SMc00570at 1240.148 kb on + strand, within SMc00570

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,239,043 + SMc00569 0.33 -0.9
1,239,044 - SMc00569 0.33 +1.9
1,239,044 - SMc00569 0.33 -1.2
1,239,501 - SMc00570 0.20 -0.7
1,239,596 + SMc00570 0.29 -0.6
1,239,632 + SMc00570 0.33 +1.1
1,239,686 + SMc00570 0.38 +0.6
1,239,687 - SMc00570 0.38 +0.5
1,239,707 + SMc00570 0.40 -0.9
1,239,708 - SMc00570 0.40 +0.3
1,239,744 - SMc00570 0.43 +0.6
1,239,744 - SMc00570 0.43 -0.1
1,239,902 + SMc00570 0.58 +0.3
1,239,903 - SMc00570 0.59 +0.1
1,239,903 - SMc00570 0.59 +2.5
1,239,903 - SMc00570 0.59 -0.7
1,239,926 + SMc00570 0.61 +0.2
1,239,926 + SMc00570 0.61 -0.2
1,239,957 - SMc00570 0.64 +0.4
1,239,968 + SMc00570 0.65 -0.1
1,239,968 + SMc00570 0.65 +0.3
1,239,969 - SMc00570 0.65 -0.2
1,239,969 - SMc00570 0.65 +0.9
1,240,148 + SMc00570 0.82 +0.6

Or see this region's nucleotide sequence