Strain Fitness in Sinorhizobium meliloti 1021 around SMc00531

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00532 and SMc00531 are separated by 22 nucleotidesSMc00531 and SMc00530 are separated by 77 nucleotides SMc00532: SMc00532 - hypothetical protein, at 1,876,269 to 1,877,546 SMc00532 SMc00531: SMc00531 - ABC transporter ATP-binding protein, at 1,877,569 to 1,878,324 SMc00531 SMc00530: SMc00530 - cysteine desulfurase activator complex subunit SufB, at 1,878,402 to 1,879,871 SMc00530 Position (kb) 1877 1878 1879Strain fitness (log2 ratio) -1 0 1at 1878.389 kb on - strandat 1878.404 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,878,389 - +0.6
1,878,404 - -0.5

Or see this region's nucleotide sequence