Strain Fitness in Sinorhizobium meliloti 1021 around SMc00327

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00326 and SMc00327 are separated by 4 nucleotidesSMc00327 and SMc00328 are separated by 49 nucleotidesSMc00328 and SMc00329 are separated by 377 nucleotides SMc00326: SMc00326 - enoyl-ACP reductase, at 280,795 to 281,601 SMc00326 SMc00327: SMc00327 - 3-oxoacyl-ACP synthase, at 281,606 to 282,826 SMc00327 SMc00328: SMc00328 - 3-hydroxydecanoyl-ACP dehydratase, at 282,876 to 283,391 SMc00328 SMc00329: SMc00329 - iron response regulator protein, at 283,769 to 284,191 SMc00329 Position (kb) 281 282 283Strain fitness (log2 ratio) -1 0 1at 280.633 kb on - strandat 280.718 kb on + strandat 280.796 kb on + strandat 283.437 kb on - strandat 283.437 kb on - strandat 283.516 kb on - strandat 283.533 kb on - strandat 283.696 kb on - strandat 283.715 kb on + strandat 283.716 kb on - strandat 283.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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280,633 - -0.2
280,718 + +1.4
280,796 + +0.0
283,437 - -0.8
283,437 - -0.7
283,516 - +0.2
283,533 - -0.0
283,696 - -0.7
283,715 + +0.6
283,716 - -0.4
283,750 + -1.0

Or see this region's nucleotide sequence