Strain Fitness in Sinorhizobium meliloti 1021 around SMc00234

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00233 and SMc00234 are separated by 352 nucleotidesSMc00234 and SMc00235 are separated by 18 nucleotides SMc00233: SMc00233 - hypothetical protein, at 1,798,398 to 1,800,044 SMc00233 SMc00234: SMc00234 - peptidyl-prolyl cis-trans isomerase, at 1,800,397 to 1,802,289 SMc00234 SMc00235: SMc00235 - anthranilate phosphoribosyltransferase, at 1,802,308 to 1,803,321 SMc00235 Position (kb) 1800 1801 1802 1803Strain fitness (log2 ratio) -3 -2 -1 0 1at 1799.415 kb on + strand, within SMc00233at 1799.604 kb on + strand, within SMc00233at 1799.604 kb on + strand, within SMc00233at 1800.146 kb on + strandat 1800.146 kb on + strandat 1800.164 kb on - strandat 1800.339 kb on + strandat 1800.361 kb on + strandat 1802.236 kb on + strandat 1802.572 kb on - strand, within SMc00235at 1802.572 kb on - strand, within SMc00235at 1802.575 kb on + strand, within SMc00235at 1802.575 kb on + strand, within SMc00235at 1802.575 kb on + strand, within SMc00235at 1802.575 kb on + strand, within SMc00235at 1802.576 kb on - strand, within SMc00235at 1803.117 kb on + strand, within SMc00235at 1803.206 kb on + strand, within SMc00235at 1803.206 kb on + strand, within SMc00235at 1803.206 kb on + strand, within SMc00235at 1803.207 kb on - strand, within SMc00235

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,799,415 + SMc00233 0.62 +0.2
1,799,604 + SMc00233 0.73 -0.9
1,799,604 + SMc00233 0.73 +0.5
1,800,146 + +0.2
1,800,146 + +1.3
1,800,164 - -1.1
1,800,339 + -0.0
1,800,361 + -0.3
1,802,236 + +0.8
1,802,572 - SMc00235 0.26 -2.2
1,802,572 - SMc00235 0.26 -0.7
1,802,575 + SMc00235 0.26 -0.5
1,802,575 + SMc00235 0.26 -2.9
1,802,575 + SMc00235 0.26 +0.2
1,802,575 + SMc00235 0.26 +0.4
1,802,576 - SMc00235 0.26 -0.7
1,803,117 + SMc00235 0.80 -1.6
1,803,206 + SMc00235 0.89 +0.2
1,803,206 + SMc00235 0.89 -0.2
1,803,206 + SMc00235 0.89 +0.2
1,803,207 - SMc00235 0.89 +1.2

Or see this region's nucleotide sequence