Strain Fitness in Sinorhizobium meliloti 1021 around SMc00122

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00128 and SMc00457 overlap by 8 nucleotidesSMc00457 and SMc00122 are separated by 97 nucleotidesSMc00122 and SMc00064 are separated by 120 nucleotidesSMc00064 and SMc00123 are separated by 61 nucleotides SMc00128: SMc00128 - hypothetical protein, at 1,099,690 to 1,100,235 SMc00128 SMc00457: SMc00457 - hypothetical protein, at 1,100,228 to 1,100,815 SMc00457 SMc00122: SMc00122 - penicillin-binding protein, at 1,100,913 to 1,103,147 SMc00122 SMc00064: SMc00064 - hypothetical protein, at 1,103,268 to 1,103,735 SMc00064 SMc00123: SMc00123 - hypothetical protein, at 1,103,797 to 1,104,132 SMc00123 Position (kb) 1100 1101 1102 1103 1104Strain fitness (log2 ratio) -3 -2 -1 0 1at 1100.846 kb on - strandat 1100.846 kb on - strandat 1103.154 kb on - strandat 1103.154 kb on - strandat 1103.154 kb on - strandat 1103.154 kb on - strandat 1103.455 kb on - strand, within SMc00064at 1103.575 kb on - strand, within SMc00064at 1103.575 kb on - strand, within SMc00064at 1103.688 kb on + strand, within SMc00064at 1103.689 kb on - strandat 1103.707 kb on + strandat 1103.708 kb on - strandat 1103.708 kb on - strandat 1103.768 kb on + strandat 1103.769 kb on - strandat 1103.769 kb on - strandat 1104.143 kb on + strandat 1104.143 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,100,846 - -0.8
1,100,846 - -2.4
1,103,154 - -0.2
1,103,154 - -1.9
1,103,154 - -1.1
1,103,154 - -0.9
1,103,455 - SMc00064 0.40 -0.8
1,103,575 - SMc00064 0.66 -3.2
1,103,575 - SMc00064 0.66 -0.2
1,103,688 + SMc00064 0.90 -1.6
1,103,689 - -0.1
1,103,707 + +1.0
1,103,708 - -1.2
1,103,708 - -1.7
1,103,768 + -0.6
1,103,769 - +0.2
1,103,769 - -0.0
1,104,143 + -0.2
1,104,143 + +0.4

Or see this region's nucleotide sequence