Strain Fitness in Sinorhizobium meliloti 1021 around SMc00072

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00017 and SMc00018 overlap by 4 nucleotidesSMc00018 and SMc00072 are separated by 210 nucleotidesSMc00072 and SMc00073 are separated by 55 nucleotides SMc00017: SMc00017 - homoserine kinase, at 999,940 to 1,000,920 SMc00017 SMc00018: SMc00018 - ribonuclease H, at 1,000,917 to 1,001,378 SMc00018 SMc00072: SMc00072 - peroxiredoxin protein, at 1,001,589 to 1,002,074 SMc00072 SMc00073: SMc00073 - hypothetical protein, at 1,002,130 to 1,003,068 SMc00073 Position (kb) 1001 1002 1003Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1000.888 kb on + strandat 1001.376 kb on + strandat 1001.377 kb on - strandat 1001.756 kb on + strand, within SMc00072at 1002.093 kb on - strandat 1002.095 kb on - strandat 1002.095 kb on - strandat 1002.095 kb on - strandat 1002.118 kb on + strandat 1002.119 kb on - strandat 1002.120 kb on + strandat 1002.121 kb on - strandat 1002.196 kb on - strandat 1002.534 kb on + strand, within SMc00073at 1002.535 kb on - strand, within SMc00073at 1002.535 kb on - strand, within SMc00073at 1002.764 kb on + strand, within SMc00073at 1002.765 kb on - strand, within SMc00073at 1003.025 kb on - strandat 1003.041 kb on - strandat 1003.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,000,888 + -0.3
1,001,376 + +0.9
1,001,377 - +1.3
1,001,756 + SMc00072 0.34 -2.3
1,002,093 - +0.6
1,002,095 - +0.0
1,002,095 - +0.4
1,002,095 - +1.8
1,002,118 + +0.4
1,002,119 - -0.3
1,002,120 + +1.1
1,002,121 - +0.2
1,002,196 - -4.1
1,002,534 + SMc00073 0.43 -1.8
1,002,535 - SMc00073 0.43 +0.8
1,002,535 - SMc00073 0.43 -1.8
1,002,764 + SMc00073 0.68 +1.0
1,002,765 - SMc00073 0.68 -1.0
1,003,025 - -0.1
1,003,041 - +0.3
1,003,041 - -0.1

Or see this region's nucleotide sequence