Strain Fitness in Sinorhizobium meliloti 1021 around SMa2171

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2168 and SMa2169 are separated by 38 nucleotidesSMa2169 and SMa2171 are separated by 453 nucleotidesSMa2171 and SMa2175 are separated by 457 nucleotides SMa2168: SMa2168 - tRNA-Met, at 1,222,024 to 1,222,096 SMa2168 SMa2169: SMa2169 - hypothetical protein, at 1,222,135 to 1,222,512 SMa2169 SMa2171: SMa2171 - Transposase, at 1,222,966 to 1,224,603 SMa2171 SMa2175: SMa2175 - Integrase/recombinase, at 1,225,061 to 1,226,050 SMa2175 Position (kb) 1222 1223 1224 1225Strain fitness (log2 ratio) -2 -1 0 1 2at 1222.032 kb on - strand, within SMa2168at 1222.032 kb on - strand, within SMa2168at 1222.136 kb on + strandat 1222.136 kb on + strandat 1222.136 kb on + strandat 1222.136 kb on + strandat 1222.136 kb on + strandat 1222.137 kb on - strandat 1222.189 kb on + strand, within SMa2169at 1222.233 kb on - strand, within SMa2169at 1222.302 kb on + strand, within SMa2169at 1222.302 kb on + strand, within SMa2169at 1222.309 kb on - strand, within SMa2169at 1222.309 kb on - strand, within SMa2169at 1222.309 kb on - strand, within SMa2169at 1222.551 kb on + strandat 1222.563 kb on + strandat 1222.564 kb on - strandat 1222.564 kb on - strandat 1224.985 kb on - strandat 1224.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,222,032 - SMa2168 0.11 -1.3
1,222,032 - SMa2168 0.11 -2.5
1,222,136 + +1.5
1,222,136 + -1.8
1,222,136 + -0.6
1,222,136 + +0.2
1,222,136 + -0.0
1,222,137 - +2.7
1,222,189 + SMa2169 0.14 +0.1
1,222,233 - SMa2169 0.26 -0.9
1,222,302 + SMa2169 0.44 +1.2
1,222,302 + SMa2169 0.44 +1.5
1,222,309 - SMa2169 0.46 -2.0
1,222,309 - SMa2169 0.46 +1.2
1,222,309 - SMa2169 0.46 -0.1
1,222,551 + +0.6
1,222,563 + +0.7
1,222,564 - -1.8
1,222,564 - -1.4
1,224,985 - +0.2
1,224,985 - -1.8

Or see this region's nucleotide sequence