Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1657 and SMa1658 are separated by 4 nucleotides SMa1658 and SMa1660 are separated by 245 nucleotides SMa1660 and SMa1662 are separated by 436 nucleotides
SMa1657: SMa1657 - hypothetical protein, at 925,848 to 926,255
SMa1657
SMa1658: SMa1658 - hypothetical protein, at 926,260 to 926,625
SMa1658
SMa1660: SMa1660 - hypothetical protein, at 926,871 to 927,455
SMa1660
SMa1662: SMa1662 - Cation/multidrug efflux pump, at 927,892 to 931,026
SMa1662
Position (kb) 926
927
928 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 925.959 kb on + strand, within SMa1657 at 926.004 kb on - strand, within SMa1657 at 926.009 kb on + strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.037 kb on + strand, within SMa1657 at 926.053 kb on + strand, within SMa1657 at 926.136 kb on - strand, within SMa1657 at 926.136 kb on - strand, within SMa1657 at 926.234 kb on - strand at 926.262 kb on - strand at 926.269 kb on + strand at 926.544 kb on + strand, within SMa1658 at 926.569 kb on + strand, within SMa1658 at 926.585 kb on - strand, within SMa1658 at 926.614 kb on + strand at 926.735 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.753 kb on - strand at 926.764 kb on + strand at 926.765 kb on - strand at 926.765 kb on - strand at 926.765 kb on - strand at 926.852 kb on + strand at 926.886 kb on + strand at 927.098 kb on - strand, within SMa1660 at 927.098 kb on - strand, within SMa1660 at 927.121 kb on + strand, within SMa1660 at 927.253 kb on + strand, within SMa1660 at 927.335 kb on - strand, within SMa1660 at 927.335 kb on - strand, within SMa1660 at 927.368 kb on + strand, within SMa1660 at 927.431 kb on + strand at 927.471 kb on + strand at 927.509 kb on - strand at 927.614 kb on + strand at 927.615 kb on - strand at 927.615 kb on - strand at 927.673 kb on + strand at 927.679 kb on + strand at 927.679 kb on + strand at 927.680 kb on - strand at 927.680 kb on - strand at 927.756 kb on + strand at 927.761 kb on + strand at 927.762 kb on - strand at 927.848 kb on - strand at 927.848 kb on - strand at 927.848 kb on - strand at 927.966 kb on - strand at 928.118 kb on - strand at 928.241 kb on - strand, within SMa1662 at 928.241 kb on - strand, within SMa1662 at 928.262 kb on + strand, within SMa1662 at 928.263 kb on - strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.265 kb on - strand, within SMa1662 at 928.364 kb on + strand, within SMa1662 at 928.385 kb on + strand, within SMa1662
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 925,959 + SMa1657 0.27 +2.5 926,004 - SMa1657 0.38 +0.9 926,009 + SMa1657 0.39 +0.7 926,010 - SMa1657 0.40 +1.1 926,010 - SMa1657 0.40 +1.3 926,010 - SMa1657 0.40 +0.3 926,037 + SMa1657 0.46 -1.4 926,053 + SMa1657 0.50 -1.5 926,136 - SMa1657 0.71 -0.1 926,136 - SMa1657 0.71 -0.1 926,234 - -1.0 926,262 - -0.4 926,269 + -3.8 926,544 + SMa1658 0.78 -0.0 926,569 + SMa1658 0.84 -0.5 926,585 - SMa1658 0.89 +1.3 926,614 + +1.2 926,735 + +2.0 926,752 + -1.7 926,752 + -1.6 926,752 + -0.4 926,752 + -2.9 926,753 - +0.5 926,764 + +1.6 926,765 - -1.3 926,765 - +0.1 926,765 - -2.0 926,852 + -0.4 926,886 + +0.9 927,098 - SMa1660 0.39 -2.8 927,098 - SMa1660 0.39 -3.2 927,121 + SMa1660 0.43 -3.0 927,253 + SMa1660 0.65 -0.1 927,335 - SMa1660 0.79 -2.5 927,335 - SMa1660 0.79 +0.5 927,368 + SMa1660 0.85 -2.0 927,431 + -1.8 927,471 + +0.0 927,509 - -0.3 927,614 + -1.5 927,615 - -1.3 927,615 - +0.2 927,673 + -0.1 927,679 + -0.5 927,679 + +0.7 927,680 - -0.0 927,680 - -0.7 927,756 + +0.2 927,761 + +0.5 927,762 - +1.0 927,848 - +1.4 927,848 - +0.3 927,848 - -1.6 927,966 - +0.7 928,118 - -0.3 928,241 - SMa1662 0.11 -0.6 928,241 - SMa1662 0.11 -2.1 928,262 + SMa1662 0.12 -1.2 928,263 - SMa1662 0.12 -0.1 928,264 + SMa1662 0.12 +3.3 928,264 + SMa1662 0.12 -1.0 928,264 + SMa1662 0.12 -1.1 928,265 - SMa1662 0.12 -3.5 928,364 + SMa1662 0.15 -1.0 928,385 + SMa1662 0.16 +0.2
Or see this region's nucleotide sequence