Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1652 and SMa1653 are separated by 2 nucleotides SMa1653 and SMa1654 are separated by 162 nucleotides
SMa1652: SMa1652 - hydantoin racemase, at 923,065 to 923,850
SMa1652
SMa1653: SMa1653 - hypothetical protein, at 923,853 to 924,578
SMa1653
SMa1654: SMa1654 - GntR family transcriptional regulator, at 924,741 to 925,439
SMa1654
Position (kb) 923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 923.037 kb on - strand at 923.041 kb on + strand at 923.046 kb on - strand at 923.081 kb on + strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.206 kb on + strand, within SMa1652 at 923.220 kb on - strand, within SMa1652 at 923.220 kb on - strand, within SMa1652 at 923.449 kb on + strand, within SMa1652 at 923.498 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.518 kb on - strand, within SMa1652 at 923.591 kb on + strand, within SMa1652 at 923.592 kb on - strand, within SMa1652 at 923.630 kb on + strand, within SMa1652 at 923.740 kb on + strand, within SMa1652 at 923.759 kb on - strand, within SMa1652 at 923.841 kb on - strand at 923.841 kb on - strand at 923.844 kb on + strand at 923.845 kb on - strand at 923.848 kb on + strand at 923.848 kb on + strand at 923.848 kb on + strand at 923.849 kb on - strand at 923.849 kb on - strand at 924.313 kb on + strand, within SMa1653 at 924.321 kb on + strand, within SMa1653 at 924.321 kb on + strand, within SMa1653 at 924.322 kb on - strand, within SMa1653 at 924.322 kb on - strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.358 kb on - strand, within SMa1653 at 924.494 kb on - strand, within SMa1653 at 924.649 kb on - strand at 924.685 kb on + strand at 924.700 kb on + strand at 924.792 kb on + strand at 924.792 kb on + strand at 924.792 kb on + strand at 924.793 kb on - strand at 924.873 kb on + strand, within SMa1654 at 925.013 kb on - strand, within SMa1654 at 925.162 kb on + strand, within SMa1654 at 925.162 kb on + strand, within SMa1654 at 925.188 kb on - strand, within SMa1654 at 925.188 kb on - strand, within SMa1654 at 925.498 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 923,037 - +1.0 923,041 + +0.9 923,046 - -0.3 923,081 + +0.5 923,095 - +0.3 923,095 - +0.7 923,095 - -2.2 923,095 - +2.5 923,206 + SMa1652 0.18 +0.8 923,220 - SMa1652 0.20 -0.5 923,220 - SMa1652 0.20 -0.0 923,449 + SMa1652 0.49 -0.2 923,498 + SMa1652 0.55 +1.8 923,517 + SMa1652 0.58 +0.4 923,517 + SMa1652 0.58 -0.1 923,517 + SMa1652 0.58 -0.4 923,518 - SMa1652 0.58 +0.5 923,591 + SMa1652 0.67 +1.0 923,592 - SMa1652 0.67 -3.5 923,630 + SMa1652 0.72 +0.7 923,740 + SMa1652 0.86 +1.0 923,759 - SMa1652 0.88 -0.1 923,841 - +2.2 923,841 - +0.8 923,844 + +0.2 923,845 - +0.3 923,848 + -0.6 923,848 + -2.5 923,848 + -0.3 923,849 - -0.1 923,849 - +0.0 924,313 + SMa1653 0.63 +1.9 924,321 + SMa1653 0.64 -0.3 924,321 + SMa1653 0.64 -0.0 924,322 - SMa1653 0.65 -0.7 924,322 - SMa1653 0.65 -1.2 924,357 + SMa1653 0.69 -2.1 924,357 + SMa1653 0.69 +0.2 924,357 + SMa1653 0.69 -0.2 924,358 - SMa1653 0.70 -1.6 924,494 - SMa1653 0.88 -1.8 924,649 - +1.0 924,685 + -0.9 924,700 + -1.2 924,792 + +0.5 924,792 + +0.9 924,792 + +0.4 924,793 - -1.4 924,873 + SMa1654 0.19 -0.3 925,013 - SMa1654 0.39 +0.4 925,162 + SMa1654 0.60 +0.2 925,162 + SMa1654 0.60 -0.3 925,188 - SMa1654 0.64 +0.5 925,188 - SMa1654 0.64 +0.4 925,498 + -1.4
Or see this region's nucleotide sequence