Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1602 and SMa1604 are separated by 83 nucleotides SMa1604 and SMa1606 overlap by 4 nucleotides
SMa1602: SMa1602 - LysR family transcriptional regulator, at 893,872 to 894,747
SMa1602
SMa1604: SMa1604 - NADH:flavin oxidoreductase / NADH oxidase, at 894,831 to 895,922
SMa1604
SMa1606: SMa1606 - hypothetical protein, at 895,919 to 896,896
SMa1606
Position (kb) 894
895
896 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 894.136 kb on + strand, within SMa1602 at 894.251 kb on + strand, within SMa1602 at 894.252 kb on - strand, within SMa1602 at 894.395 kb on + strand, within SMa1602 at 894.426 kb on + strand, within SMa1602 at 894.486 kb on + strand, within SMa1602 at 894.486 kb on + strand, within SMa1602 at 894.551 kb on + strand, within SMa1602 at 894.551 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.555 kb on - strand, within SMa1602 at 894.580 kb on + strand, within SMa1602 at 894.580 kb on + strand, within SMa1602 at 894.581 kb on - strand, within SMa1602 at 894.825 kb on + strand at 894.825 kb on + strand at 894.826 kb on - strand at 894.879 kb on + strand at 894.880 kb on - strand at 894.942 kb on - strand, within SMa1604 at 894.970 kb on - strand, within SMa1604 at 894.970 kb on - strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.060 kb on - strand, within SMa1604 at 895.128 kb on + strand, within SMa1604 at 895.154 kb on + strand, within SMa1604 at 895.378 kb on - strand, within SMa1604 at 895.578 kb on + strand, within SMa1604 at 895.585 kb on - strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.643 kb on + strand, within SMa1604 at 895.855 kb on - strand at 896.108 kb on - strand, within SMa1606 at 896.229 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.503 kb on + strand, within SMa1606 at 896.503 kb on + strand, within SMa1606 at 896.504 kb on - strand, within SMa1606 at 896.509 kb on + strand, within SMa1606 at 896.549 kb on + strand, within SMa1606 at 896.550 kb on - strand, within SMa1606 at 896.680 kb on + strand, within SMa1606 at 896.795 kb on + strand, within SMa1606 at 896.796 kb on - strand, within SMa1606 at 896.796 kb on - strand, within SMa1606 at 896.843 kb on - strand at 896.901 kb on + strand at 896.902 kb on - strand at 896.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 893,855 - +0.4 893,855 - -0.1 893,855 - -1.4 893,855 - +1.0 894,136 + SMa1602 0.30 -1.1 894,251 + SMa1602 0.43 +0.2 894,252 - SMa1602 0.43 -3.2 894,395 + SMa1602 0.60 +0.4 894,426 + SMa1602 0.63 +1.0 894,486 + SMa1602 0.70 -2.0 894,486 + SMa1602 0.70 +1.3 894,551 + SMa1602 0.78 +2.0 894,551 + SMa1602 0.78 -3.2 894,554 + SMa1602 0.78 +1.6 894,554 + SMa1602 0.78 +1.0 894,554 + SMa1602 0.78 -0.6 894,555 - SMa1602 0.78 -1.1 894,580 + SMa1602 0.81 +0.4 894,580 + SMa1602 0.81 +0.7 894,581 - SMa1602 0.81 -1.9 894,825 + -1.2 894,825 + -0.1 894,826 - +0.2 894,879 + +0.3 894,880 - -3.3 894,942 - SMa1604 0.10 +0.4 894,970 - SMa1604 0.13 +0.7 894,970 - SMa1604 0.13 -1.1 895,038 + SMa1604 0.19 -0.9 895,038 + SMa1604 0.19 -1.0 895,038 + SMa1604 0.19 -0.4 895,060 - SMa1604 0.21 +0.2 895,128 + SMa1604 0.27 -3.2 895,154 + SMa1604 0.30 +0.9 895,378 - SMa1604 0.50 -1.6 895,578 + SMa1604 0.68 -1.1 895,585 - SMa1604 0.69 +1.1 895,620 + SMa1604 0.72 -1.0 895,620 + SMa1604 0.72 -0.6 895,620 + SMa1604 0.72 +0.4 895,621 - SMa1604 0.72 -1.7 895,621 - SMa1604 0.72 -2.1 895,621 - SMa1604 0.72 -0.9 895,643 + SMa1604 0.74 -0.9 895,855 - +0.6 896,108 - SMa1606 0.19 +0.5 896,229 - SMa1606 0.32 -1.9 896,412 - SMa1606 0.50 +0.1 896,412 - SMa1606 0.50 -0.1 896,412 - SMa1606 0.50 +0.1 896,415 + SMa1606 0.51 -3.8 896,415 + SMa1606 0.51 +0.9 896,415 + SMa1606 0.51 +2.1 896,503 + SMa1606 0.60 +0.7 896,503 + SMa1606 0.60 +0.4 896,504 - SMa1606 0.60 +0.2 896,509 + SMa1606 0.60 -2.7 896,549 + SMa1606 0.64 -1.0 896,550 - SMa1606 0.65 +2.0 896,680 + SMa1606 0.78 -0.4 896,795 + SMa1606 0.90 -0.1 896,796 - SMa1606 0.90 -2.0 896,796 - SMa1606 0.90 -2.1 896,843 - -2.3 896,901 + -1.9 896,902 - +0.4 896,902 - -0.7
Or see this region's nucleotide sequence