Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1415 and SMa1417 are separated by 162 nucleotides SMa1417 and SMa1418 are separated by 18 nucleotides SMa1418 and SMa1421 are separated by 7 nucleotides
SMa1415: SMa1415 - aldehyde dehydrogenase, at 779,216 to 780,712
SMa1415
SMa1417: SMa1417 - Dehydrogenase, Zn-dependent, at 780,875 to 781,900
SMa1417
SMa1418: SMa1418 - ABC transporter permease, at 781,919 to 782,860
SMa1418
SMa1421: SMa1421 - ABC transporter ATP-binding protein, at 782,868 to 784,379
SMa1421
Position (kb) 780
781
782 Strain fitness (log2 ratio) -2
-1
0
1
2 at 780.076 kb on + strand, within SMa1415 at 780.076 kb on + strand, within SMa1415 at 780.077 kb on - strand, within SMa1415 at 780.078 kb on + strand, within SMa1415 at 780.079 kb on - strand, within SMa1415 at 780.212 kb on - strand, within SMa1415 at 780.341 kb on + strand, within SMa1415 at 780.730 kb on + strand at 780.877 kb on - strand at 780.961 kb on - strand at 781.077 kb on - strand, within SMa1417 at 781.088 kb on + strand, within SMa1417 at 781.121 kb on - strand, within SMa1417 at 781.271 kb on + strand, within SMa1417 at 781.515 kb on - strand, within SMa1417 at 781.515 kb on - strand, within SMa1417 at 781.542 kb on + strand, within SMa1417 at 781.542 kb on + strand, within SMa1417 at 781.543 kb on - strand, within SMa1417 at 781.759 kb on - strand, within SMa1417 at 781.772 kb on + strand, within SMa1417 at 781.772 kb on + strand, within SMa1417 at 781.773 kb on - strand, within SMa1417 at 781.773 kb on - strand, within SMa1417 at 781.793 kb on + strand, within SMa1417 at 781.794 kb on - strand, within SMa1417 at 781.794 kb on - strand, within SMa1417 at 781.921 kb on - strand at 782.240 kb on + strand, within SMa1418 at 782.240 kb on + strand, within SMa1418 at 782.247 kb on + strand, within SMa1418 at 782.532 kb on + strand, within SMa1418 at 782.550 kb on + strand, within SMa1418 at 782.550 kb on + strand, within SMa1418 at 782.689 kb on + strand, within SMa1418 at 782.691 kb on + strand, within SMa1418 at 782.691 kb on + strand, within SMa1418 at 782.692 kb on - strand, within SMa1418 at 782.852 kb on + strand at 782.852 kb on + strand at 782.853 kb on - strand at 782.853 kb on - strand at 782.863 kb on + strand at 782.863 kb on + strand at 782.863 kb on + strand at 782.878 kb on + strand at 782.878 kb on + strand at 782.879 kb on - strand at 782.893 kb on + strand at 782.894 kb on - strand at 782.894 kb on - strand at 782.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 780,076 + SMa1415 0.57 +0.2 780,076 + SMa1415 0.57 +1.0 780,077 - SMa1415 0.58 -0.8 780,078 + SMa1415 0.58 +1.2 780,079 - SMa1415 0.58 -0.3 780,212 - SMa1415 0.67 +0.3 780,341 + SMa1415 0.75 +0.5 780,730 + +0.1 780,877 - -0.7 780,961 - -0.5 781,077 - SMa1417 0.20 -2.7 781,088 + SMa1417 0.21 -0.6 781,121 - SMa1417 0.24 -0.7 781,271 + SMa1417 0.39 -0.6 781,515 - SMa1417 0.62 +0.2 781,515 - SMa1417 0.62 -2.1 781,542 + SMa1417 0.65 +1.7 781,542 + SMa1417 0.65 -1.6 781,543 - SMa1417 0.65 +0.4 781,759 - SMa1417 0.86 -1.3 781,772 + SMa1417 0.87 -1.0 781,772 + SMa1417 0.87 +0.3 781,773 - SMa1417 0.88 +2.0 781,773 - SMa1417 0.88 -0.8 781,793 + SMa1417 0.89 +0.4 781,794 - SMa1417 0.90 +0.2 781,794 - SMa1417 0.90 +0.1 781,921 - -0.6 782,240 + SMa1418 0.34 -1.7 782,240 + SMa1418 0.34 +0.2 782,247 + SMa1418 0.35 -0.8 782,532 + SMa1418 0.65 -2.3 782,550 + SMa1418 0.67 +1.2 782,550 + SMa1418 0.67 -2.2 782,689 + SMa1418 0.82 -2.4 782,691 + SMa1418 0.82 +0.1 782,691 + SMa1418 0.82 -1.0 782,692 - SMa1418 0.82 -0.3 782,852 + +0.5 782,852 + +1.7 782,853 - -0.8 782,853 - -2.6 782,863 + -2.6 782,863 + +1.3 782,863 + -0.4 782,878 + -1.2 782,878 + -0.4 782,879 - +0.1 782,893 + -0.7 782,894 - +1.2 782,894 - -2.2 782,894 - -1.6
Or see this region's nucleotide sequence