Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0929 and SMa0930 overlap by 10 nucleotides SMa0930 and SMa0933 overlap by 11 nucleotides SMa0933 and SMa0934 are separated by 178 nucleotides
SMa0929: SMa0929 - conjugal transfer protein TraG, at 513,088 to 515,007
SMa0929
SMa0930: SMa0930 - TraD conjugal transfer protein, at 514,998 to 515,237
SMa0930
SMa0933: SMa0933 - TraC conjugal transfer protein, at 515,227 to 515,514
SMa0933
SMa0934: SMa0934 - TraA1 conjugal transfer protein, at 515,693 to 520,312
SMa0934
Position (kb) 513
514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 512.820 kb on - strand at 512.832 kb on + strand at 512.832 kb on + strand at 512.873 kb on + strand at 512.873 kb on + strand at 512.873 kb on + strand at 512.874 kb on - strand at 512.903 kb on - strand at 512.904 kb on + strand at 512.905 kb on - strand at 512.905 kb on - strand at 513.405 kb on - strand, within SMa0929 at 513.485 kb on + strand, within SMa0929 at 513.486 kb on - strand, within SMa0929 at 513.510 kb on - strand, within SMa0929 at 513.551 kb on + strand, within SMa0929 at 513.551 kb on + strand, within SMa0929 at 513.552 kb on - strand, within SMa0929 at 513.665 kb on + strand, within SMa0929 at 513.764 kb on + strand, within SMa0929 at 513.765 kb on - strand, within SMa0929 at 513.789 kb on + strand, within SMa0929 at 513.790 kb on - strand, within SMa0929 at 513.809 kb on + strand, within SMa0929 at 513.838 kb on - strand, within SMa0929 at 513.934 kb on + strand, within SMa0929 at 514.040 kb on + strand, within SMa0929 at 514.041 kb on - strand, within SMa0929 at 514.314 kb on - strand, within SMa0929 at 514.314 kb on - strand, within SMa0929 at 514.341 kb on + strand, within SMa0929 at 514.341 kb on + strand, within SMa0929 at 514.342 kb on - strand, within SMa0929 at 514.342 kb on - strand, within SMa0929 at 514.565 kb on - strand, within SMa0929 at 514.679 kb on - strand, within SMa0929 at 514.931 kb on + strand at 514.931 kb on + strand at 514.932 kb on - strand at 515.438 kb on - strand, within SMa0933 at 515.547 kb on + strand at 515.651 kb on - strand at 515.651 kb on - strand at 515.651 kb on - strand at 515.651 kb on - strand at 515.651 kb on - strand at 515.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 512,820 - -0.6 512,832 + -0.7 512,832 + -1.4 512,873 + -2.0 512,873 + -0.1 512,873 + -0.3 512,874 - -2.6 512,903 - -0.4 512,904 + -0.1 512,905 - +0.1 512,905 - -2.2 513,405 - SMa0929 0.17 +1.1 513,485 + SMa0929 0.21 +2.4 513,486 - SMa0929 0.21 -0.8 513,510 - SMa0929 0.22 -1.9 513,551 + SMa0929 0.24 -0.2 513,551 + SMa0929 0.24 -0.1 513,552 - SMa0929 0.24 +0.3 513,665 + SMa0929 0.30 -0.5 513,764 + SMa0929 0.35 -0.6 513,765 - SMa0929 0.35 -0.3 513,789 + SMa0929 0.37 -1.8 513,790 - SMa0929 0.37 -0.7 513,809 + SMa0929 0.38 +0.7 513,838 - SMa0929 0.39 +0.0 513,934 + SMa0929 0.44 +0.0 514,040 + SMa0929 0.50 +1.4 514,041 - SMa0929 0.50 -2.4 514,314 - SMa0929 0.64 -0.3 514,314 - SMa0929 0.64 +0.3 514,341 + SMa0929 0.65 -0.9 514,341 + SMa0929 0.65 -1.6 514,342 - SMa0929 0.65 -2.4 514,342 - SMa0929 0.65 -2.3 514,565 - SMa0929 0.77 +0.2 514,679 - SMa0929 0.83 -1.2 514,931 + -3.1 514,931 + +1.0 514,932 - +0.4 515,438 - SMa0933 0.73 +0.1 515,547 + -2.3 515,651 - -1.2 515,651 - +2.5 515,651 - -0.8 515,651 - +2.7 515,651 - -0.1 515,651 - -0.9
Or see this region's nucleotide sequence