Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0851 and SMa0852 are separated by 688 nucleotides SMa0852 and SMa0853 are separated by 0 nucleotides
SMa0851: SMa0851 - NodH sulfotransferase, at 468,199 to 468,942
SMa0851
SMa0852: SMa0852 - acyl carrier protein, at 469,631 to 469,912
SMa0852
SMa0853: SMa0853 - 3-ketoacyl-ACP synthase, at 469,913 to 471,121
SMa0853
Position (kb) 469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 468.793 kb on - strand, within SMa0851 at 468.813 kb on - strand, within SMa0851 at 468.960 kb on + strand at 468.990 kb on - strand at 469.012 kb on - strand at 469.012 kb on - strand at 469.034 kb on + strand at 469.049 kb on + strand at 469.049 kb on + strand at 469.050 kb on - strand at 469.055 kb on + strand at 469.055 kb on + strand at 469.056 kb on - strand at 469.168 kb on - strand at 469.198 kb on - strand at 469.237 kb on + strand at 469.275 kb on + strand at 469.290 kb on + strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.436 kb on - strand at 469.439 kb on + strand at 469.440 kb on - strand at 469.440 kb on - strand at 469.440 kb on - strand at 469.532 kb on + strand at 469.635 kb on + strand at 469.635 kb on + strand at 469.713 kb on + strand, within SMa0852 at 469.716 kb on + strand, within SMa0852 at 469.717 kb on - strand, within SMa0852 at 469.808 kb on + strand, within SMa0852 at 469.808 kb on + strand, within SMa0852 at 469.809 kb on - strand, within SMa0852 at 469.809 kb on - strand, within SMa0852 at 469.872 kb on + strand, within SMa0852 at 469.901 kb on - strand at 469.950 kb on + strand at 470.055 kb on + strand, within SMa0853 at 470.262 kb on - strand, within SMa0853 at 470.262 kb on - strand, within SMa0853 at 470.313 kb on + strand, within SMa0853 at 470.313 kb on + strand, within SMa0853 at 470.580 kb on + strand, within SMa0853 at 470.580 kb on + strand, within SMa0853 at 470.581 kb on - strand, within SMa0853 at 470.581 kb on - strand, within SMa0853 at 470.619 kb on - strand, within SMa0853 at 470.780 kb on + strand, within SMa0853 at 470.830 kb on + strand, within SMa0853 at 470.830 kb on + strand, within SMa0853 at 470.865 kb on - strand, within SMa0853
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 468,793 - SMa0851 0.80 -0.1 468,813 - SMa0851 0.83 -2.2 468,960 + -3.1 468,990 - -0.6 469,012 - -2.8 469,012 - +0.1 469,034 + -3.0 469,049 + -2.0 469,049 + -1.0 469,050 - +0.4 469,055 + +0.1 469,055 + -0.6 469,056 - +0.5 469,168 - +0.0 469,198 - -1.4 469,237 + +1.1 469,275 + +0.3 469,290 + -1.6 469,435 + +2.6 469,435 + -0.2 469,436 - -1.5 469,439 + +0.9 469,440 - +1.5 469,440 - -1.3 469,440 - +1.1 469,532 + -0.3 469,635 + +2.0 469,635 + -1.6 469,713 + SMa0852 0.29 -2.2 469,716 + SMa0852 0.30 -3.6 469,717 - SMa0852 0.30 +1.4 469,808 + SMa0852 0.63 -0.3 469,808 + SMa0852 0.63 -0.2 469,809 - SMa0852 0.63 -0.1 469,809 - SMa0852 0.63 -1.3 469,872 + SMa0852 0.85 -1.7 469,901 - +0.2 469,950 + -1.7 470,055 + SMa0853 0.12 -1.6 470,262 - SMa0853 0.29 -2.1 470,262 - SMa0853 0.29 -1.4 470,313 + SMa0853 0.33 -0.6 470,313 + SMa0853 0.33 -0.4 470,580 + SMa0853 0.55 -1.7 470,580 + SMa0853 0.55 +2.0 470,581 - SMa0853 0.55 -0.7 470,581 - SMa0853 0.55 -0.8 470,619 - SMa0853 0.58 +0.0 470,780 + SMa0853 0.72 +0.3 470,830 + SMa0853 0.76 -0.5 470,830 + SMa0853 0.76 +1.3 470,865 - SMa0853 0.79 +1.6
Or see this region's nucleotide sequence