Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0702 and SMa0705 are separated by 482 nucleotides SMa0705 and SMa0707 are separated by 51 nucleotides
SMa0702: SMa0702 - hypothetical protein, at 380,049 to 380,483
SMa0702
SMa0705: SMa0705 - DgoK2 2-dehydro-3-deoxygalactonokinase, at 380,966 to 381,907
SMa0705
SMa0707: SMa0707 - dihydrodipicolinate synthase, at 381,959 to 382,921
SMa0707
Position (kb) 380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 379.969 kb on + strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 379.970 kb on - strand at 380.002 kb on - strand at 380.065 kb on + strand at 380.065 kb on + strand at 380.065 kb on + strand at 380.223 kb on + strand, within SMa0702 at 380.271 kb on + strand, within SMa0702 at 380.271 kb on + strand, within SMa0702 at 380.272 kb on - strand, within SMa0702 at 380.274 kb on + strand, within SMa0702 at 380.274 kb on + strand, within SMa0702 at 380.314 kb on - strand, within SMa0702 at 380.347 kb on - strand, within SMa0702 at 380.562 kb on + strand at 380.563 kb on - strand at 380.664 kb on + strand at 380.665 kb on - strand at 380.731 kb on + strand at 380.732 kb on - strand at 380.967 kb on + strand at 381.076 kb on - strand, within SMa0705 at 381.153 kb on - strand, within SMa0705 at 381.381 kb on + strand, within SMa0705 at 381.382 kb on - strand, within SMa0705 at 381.382 kb on - strand, within SMa0705 at 381.473 kb on + strand, within SMa0705 at 381.473 kb on + strand, within SMa0705 at 381.474 kb on - strand, within SMa0705 at 381.651 kb on + strand, within SMa0705 at 381.651 kb on + strand, within SMa0705 at 381.652 kb on - strand, within SMa0705 at 381.945 kb on + strand at 381.945 kb on + strand at 381.946 kb on - strand at 381.946 kb on - strand at 381.946 kb on - strand at 381.946 kb on - strand at 382.484 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.601 kb on + strand, within SMa0707 at 382.674 kb on - strand, within SMa0707 at 382.722 kb on + strand, within SMa0707 at 382.722 kb on + strand, within SMa0707 at 382.722 kb on + strand, within SMa0707 at 382.748 kb on + strand, within SMa0707 at 382.809 kb on + strand, within SMa0707 at 382.809 kb on + strand, within SMa0707 at 382.810 kb on - strand, within SMa0707 at 382.810 kb on - strand, within SMa0707
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 379,969 + +1.9 379,970 - +1.2 379,970 - -0.4 379,970 - +2.0 379,970 - +2.0 379,970 - -0.9 379,970 - -0.7 380,002 - +0.8 380,065 + -3.6 380,065 + -2.1 380,065 + +0.2 380,223 + SMa0702 0.40 +0.4 380,271 + SMa0702 0.51 -1.1 380,271 + SMa0702 0.51 -0.3 380,272 - SMa0702 0.51 -0.8 380,274 + SMa0702 0.52 +0.0 380,274 + SMa0702 0.52 -3.3 380,314 - SMa0702 0.61 -0.4 380,347 - SMa0702 0.69 +1.3 380,562 + +0.9 380,563 - -0.0 380,664 + -0.8 380,665 - -0.9 380,731 + +2.7 380,732 - -0.3 380,967 + -1.3 381,076 - SMa0705 0.12 +0.4 381,153 - SMa0705 0.20 -0.2 381,381 + SMa0705 0.44 -2.0 381,382 - SMa0705 0.44 -0.9 381,382 - SMa0705 0.44 -0.6 381,473 + SMa0705 0.54 -3.6 381,473 + SMa0705 0.54 +0.2 381,474 - SMa0705 0.54 -0.1 381,651 + SMa0705 0.73 -0.3 381,651 + SMa0705 0.73 -0.7 381,652 - SMa0705 0.73 -0.3 381,945 + +2.1 381,945 + -0.2 381,946 - +2.0 381,946 - -2.1 381,946 - -2.0 381,946 - -0.3 382,484 + SMa0707 0.55 +0.3 382,552 + SMa0707 0.62 -1.9 382,552 + SMa0707 0.62 -0.0 382,552 + SMa0707 0.62 +0.2 382,552 + SMa0707 0.62 -1.9 382,601 + SMa0707 0.67 -0.6 382,674 - SMa0707 0.74 -0.2 382,722 + SMa0707 0.79 -0.1 382,722 + SMa0707 0.79 -0.9 382,722 + SMa0707 0.79 -0.9 382,748 + SMa0707 0.82 -2.0 382,809 + SMa0707 0.88 -0.2 382,809 + SMa0707 0.88 -1.1 382,810 - SMa0707 0.88 -1.5 382,810 - SMa0707 0.88 +0.5
Or see this region's nucleotide sequence