Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0633 and SMa0636 are separated by 715 nucleotides SMa0636 and SMa0637 are separated by 439 nucleotides SMa0637 and SMa0638 overlap by 4 nucleotides
SMa0633: SMa0633 - hypothetical protein, at 340,397 to 340,783
SMa0633
SMa0636: SMa0636 - hypothetical protein, at 341,499 to 342,152
SMa0636
SMa0637: SMa0637 - hypothetical protein, at 342,592 to 342,981
SMa0637
SMa0638: SMa0638 - hypothetical protein, at 342,978 to 343,235
SMa0638
Position (kb) 341
342
343 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 340.737 kb on + strand, within SMa0633 at 340.737 kb on + strand, within SMa0633 at 340.738 kb on - strand, within SMa0633 at 340.913 kb on - strand at 340.959 kb on - strand at 341.053 kb on + strand at 341.053 kb on + strand at 341.054 kb on - strand at 341.054 kb on - strand at 341.054 kb on - strand at 341.058 kb on + strand at 341.059 kb on - strand at 341.078 kb on + strand at 341.079 kb on - strand at 341.192 kb on + strand at 341.194 kb on + strand at 341.384 kb on + strand at 341.408 kb on + strand at 341.429 kb on + strand at 341.463 kb on + strand at 341.489 kb on + strand at 341.490 kb on - strand at 341.576 kb on - strand, within SMa0636 at 341.576 kb on - strand, within SMa0636 at 341.848 kb on + strand, within SMa0636 at 341.849 kb on - strand, within SMa0636 at 341.869 kb on + strand, within SMa0636 at 341.869 kb on + strand, within SMa0636 at 341.869 kb on + strand, within SMa0636 at 342.142 kb on - strand at 342.254 kb on + strand at 342.269 kb on + strand at 342.271 kb on + strand at 342.272 kb on - strand at 342.309 kb on + strand at 342.310 kb on - strand at 342.402 kb on - strand at 342.446 kb on + strand at 342.446 kb on + strand at 342.447 kb on - strand at 342.447 kb on - strand at 342.508 kb on + strand at 342.556 kb on + strand at 342.556 kb on + strand at 342.628 kb on + strand at 342.726 kb on - strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.873 kb on + strand, within SMa0637 at 342.874 kb on - strand, within SMa0637 at 342.932 kb on + strand, within SMa0637 at 343.036 kb on - strand, within SMa0638
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 340,737 + SMa0633 0.88 +1.0 340,737 + SMa0633 0.88 -1.2 340,738 - SMa0633 0.88 -0.8 340,913 - +2.0 340,959 - -0.5 341,053 + +0.1 341,053 + -0.8 341,054 - -0.2 341,054 - -0.5 341,054 - -1.1 341,058 + +0.6 341,059 - -0.1 341,078 + -0.3 341,079 - +0.5 341,192 + -0.1 341,194 + -1.4 341,384 + -0.4 341,408 + -1.0 341,429 + -0.8 341,463 + +0.6 341,489 + -0.2 341,490 - -3.9 341,576 - SMa0636 0.12 +0.6 341,576 - SMa0636 0.12 -0.9 341,848 + SMa0636 0.53 -2.3 341,849 - SMa0636 0.54 -1.1 341,869 + SMa0636 0.57 -0.1 341,869 + SMa0636 0.57 +0.4 341,869 + SMa0636 0.57 -0.9 342,142 - -2.9 342,254 + +1.0 342,269 + -0.2 342,271 + +0.4 342,272 - -0.0 342,309 + +0.7 342,310 - +0.0 342,402 - +0.9 342,446 + +1.3 342,446 + +0.1 342,447 - -0.6 342,447 - +1.0 342,508 + -1.3 342,556 + +0.5 342,556 + -2.7 342,628 + +0.0 342,726 - SMa0637 0.34 -0.3 342,727 + SMa0637 0.35 +0.6 342,727 + SMa0637 0.35 -0.2 342,727 + SMa0637 0.35 -0.1 342,727 + SMa0637 0.35 -1.0 342,727 + SMa0637 0.35 -0.8 342,727 + SMa0637 0.35 +0.6 342,728 - SMa0637 0.35 +0.0 342,728 - SMa0637 0.35 -0.2 342,728 - SMa0637 0.35 -0.7 342,873 + SMa0637 0.72 -0.7 342,874 - SMa0637 0.72 +1.5 342,932 + SMa0637 0.87 +0.8 343,036 - SMa0638 0.22 +0.7
Or see this region's nucleotide sequence