Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0621 and SMa0622 overlap by 4 nucleotides SMa0622 and SMa0625 are separated by 431 nucleotides SMa0625 and SMa0626 are separated by 522 nucleotides
SMa0621: SMa0621 - FixI2 E1-E2 type cation ATPase, at 331,477 to 333,744
SMa0621
SMa0622: SMa0622 - FixS2 nitrogen fixation protein, at 333,741 to 334,001
SMa0622
SMa0625: SMa0625 - hypothetical protein, at 334,433 to 334,594
SMa0625
SMa0626: SMa0626 - hypothetical protein, at 335,117 to 336,379
SMa0626
Position (kb) 334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 333.568 kb on + strand at 333.569 kb on - strand at 333.569 kb on - strand at 333.569 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.980 kb on - strand at 333.980 kb on - strand at 334.346 kb on - strand at 334.351 kb on + strand at 334.400 kb on + strand at 334.400 kb on + strand at 334.642 kb on + strand at 334.642 kb on + strand at 334.642 kb on + strand at 334.666 kb on + strand at 334.667 kb on - strand at 334.707 kb on + strand at 334.708 kb on - strand at 334.737 kb on + strand at 334.795 kb on + strand at 334.817 kb on + strand at 334.859 kb on - strand at 334.890 kb on + strand at 334.893 kb on + strand at 334.894 kb on - strand at 334.894 kb on - strand at 334.996 kb on + strand at 335.197 kb on - strand at 335.251 kb on + strand, within SMa0626 at 335.298 kb on - strand, within SMa0626 at 335.358 kb on + strand, within SMa0626 at 335.359 kb on - strand, within SMa0626 at 335.416 kb on + strand, within SMa0626 at 335.416 kb on + strand, within SMa0626 at 335.416 kb on + strand, within SMa0626 at 335.418 kb on + strand, within SMa0626 at 335.419 kb on - strand, within SMa0626
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 333,568 + +0.4 333,569 - -0.6 333,569 - -0.6 333,569 - +0.8 333,748 - +1.4 333,748 - -0.8 333,748 - -1.2 333,748 - +0.4 333,748 - -2.9 333,748 - -2.7 333,980 - +0.6 333,980 - -1.0 334,346 - +0.0 334,351 + -1.0 334,400 + +0.1 334,400 + +0.7 334,642 + -2.8 334,642 + -1.4 334,642 + +0.0 334,666 + -0.1 334,667 - -0.9 334,707 + -0.7 334,708 - -0.7 334,737 + +2.7 334,795 + +1.4 334,817 + +1.9 334,859 - +0.2 334,890 + -0.1 334,893 + -1.3 334,894 - +0.4 334,894 - -0.4 334,996 + +0.6 335,197 - -0.8 335,251 + SMa0626 0.11 -1.0 335,298 - SMa0626 0.14 -0.3 335,358 + SMa0626 0.19 +1.9 335,359 - SMa0626 0.19 -0.9 335,416 + SMa0626 0.24 +0.3 335,416 + SMa0626 0.24 +1.0 335,416 + SMa0626 0.24 -0.8 335,418 + SMa0626 0.24 -0.6 335,419 - SMa0626 0.24 -2.6
Or see this region's nucleotide sequence