Strain Fitness in Sinorhizobium meliloti 1021 around SMa0476

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0475 and SMa0476 are separated by 84 nucleotidesSMa0476 and SMa0478 are separated by 414 nucleotides SMa0475: SMa0475 - TRm17a transposase, at 259,012 to 259,911 SMa0475 SMa0476: SMa0476 - TRm17b transposase, at 259,996 to 260,349 SMa0476 SMa0478: SMa0478 - formate dehydrogenase, at 260,764 to 261,969 SMa0478 Position (kb) 259 260 261Strain fitness (log2 ratio) -1 0 1at 260.503 kb on + strandat 260.558 kb on - strandat 260.691 kb on + strandat 260.712 kb on + strandat 260.868 kb on - strandat 260.868 kb on - strandat 260.930 kb on + strand, within SMa0478at 260.965 kb on - strand, within SMa0478at 261.129 kb on - strand, within SMa0478

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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260,503 + +1.6
260,558 - -1.1
260,691 + +0.2
260,712 + -0.6
260,868 - +1.0
260,868 - -1.5
260,930 + SMa0478 0.14 -0.1
260,965 - SMa0478 0.17 +0.7
261,129 - SMa0478 0.30 -1.1

Or see this region's nucleotide sequence