Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0471 and SMa0473 overlap by 4 nucleotides SMa0473 and SMa0475 are separated by 188 nucleotides SMa0475 and SMa0476 are separated by 84 nucleotides SMa0476 and SMa0478 are separated by 414 nucleotides
SMa0471: SMa0471 - hypothetical protein, at 258,225 to 258,533
SMa0471
SMa0473: SMa0473 - hypothetical protein, at 258,530 to 258,823
SMa0473
SMa0475: SMa0475 - TRm17a transposase, at 259,012 to 259,911
SMa0475
SMa0476: SMa0476 - TRm17b transposase, at 259,996 to 260,349
SMa0476
SMa0478: SMa0478 - formate dehydrogenase, at 260,764 to 261,969
SMa0478
Position (kb) 259
260 Strain fitness (log2 ratio) -2
-1
0
1 at 258.103 kb on + strand at 258.104 kb on - strand at 258.104 kb on - strand at 258.108 kb on + strand at 258.108 kb on + strand at 258.109 kb on - strand at 258.109 kb on - strand at 258.584 kb on + strand, within SMa0473 at 258.585 kb on - strand, within SMa0473 at 258.713 kb on - strand, within SMa0473 at 258.713 kb on - strand, within SMa0473 at 258.728 kb on + strand, within SMa0473 at 258.729 kb on - strand, within SMa0473 at 258.741 kb on - strand, within SMa0473 at 258.822 kb on - strand at 260.503 kb on + strand at 260.558 kb on - strand at 260.691 kb on + strand at 260.712 kb on + strand at 260.868 kb on - strand at 260.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 258,103 + -0.4 258,104 - -1.6 258,104 - -0.1 258,108 + -0.2 258,108 + -2.3 258,109 - +1.2 258,109 - -0.2 258,584 + SMa0473 0.18 -1.1 258,585 - SMa0473 0.19 -0.2 258,713 - SMa0473 0.62 +0.1 258,713 - SMa0473 0.62 -0.4 258,728 + SMa0473 0.67 +0.8 258,729 - SMa0473 0.68 -1.3 258,741 - SMa0473 0.72 -0.3 258,822 - -2.4 260,503 + +1.6 260,558 - -1.1 260,691 + +0.2 260,712 + -0.6 260,868 - +1.0 260,868 - -1.5
Or see this region's nucleotide sequence