Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0163 and SMa0164 overlap by 4 nucleotides SMa0164 and SMa0166 are separated by 21 nucleotides SMa0166 and SMa0168 are separated by 83 nucleotides SMa0168 and SMa0169 are separated by 60 nucleotides
SMa0163: SMa0163 - PilQ2 pilus assembly protein, at 89,324 to 90,724
SMa0163
SMa0164: SMa0164 - hypothetical protein, at 90,721 to 91,017
SMa0164
SMa0166: SMa0166 - hypothetical protein, at 91,039 to 91,569
SMa0166
SMa0168: SMa0168 - hypothetical protein, at 91,653 to 92,465
SMa0168
SMa0169: SMa0169 - methyltransferase, at 92,526 to 93,311
SMa0169
Position (kb)
91
92
93 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 90.940 kb on + strand, within SMa0164 at 90.940 kb on + strand, within SMa0164 at 90.941 kb on - strand, within SMa0164 at 90.941 kb on - strand, within SMa0164 at 90.942 kb on + strand, within SMa0164 at 90.943 kb on - strand, within SMa0164 at 90.943 kb on - strand, within SMa0164 at 91.016 kb on - strand at 91.016 kb on - strand at 91.016 kb on - strand at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.355 kb on - strand, within SMa0166 at 91.355 kb on - strand, within SMa0166 at 91.659 kb on - strand at 91.723 kb on - strand at 91.723 kb on - strand at 91.796 kb on + strand, within SMa0168 at 92.166 kb on - strand, within SMa0168 at 92.166 kb on - strand, within SMa0168 at 92.202 kb on + strand, within SMa0168 at 92.275 kb on + strand, within SMa0168 at 92.276 kb on - strand, within SMa0168 at 92.319 kb on + strand, within SMa0168 at 92.320 kb on - strand, within SMa0168 at 92.320 kb on - strand, within SMa0168 at 92.320 kb on - strand, within SMa0168 at 92.328 kb on + strand, within SMa0168 at 92.329 kb on - strand, within SMa0168 at 92.446 kb on - strand at 92.499 kb on - strand at 92.525 kb on + strand at 92.961 kb on - strand, within SMa0169 at 93.068 kb on + strand, within SMa0169 at 93.108 kb on + strand, within SMa0169 at 93.109 kb on - strand, within SMa0169 at 93.154 kb on - strand, within SMa0169 at 93.154 kb on - strand, within SMa0169 at 93.236 kb on + strand at 93.236 kb on + strand at 93.353 kb on + strand at 93.353 kb on + strand at 93.353 kb on + strand at 93.373 kb on + strand at 93.374 kb on - strand at 93.374 kb on - strand at 93.386 kb on + strand at 93.386 kb on + strand at 93.387 kb on - strand at 93.387 kb on - strand at 93.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 90,940 + SMa0164 0.74 -0.6 90,940 + SMa0164 0.74 -4.1 90,941 - SMa0164 0.74 +1.2 90,941 - SMa0164 0.74 +2.1 90,942 + SMa0164 0.74 -1.2 90,943 - SMa0164 0.75 -0.7 90,943 - SMa0164 0.75 -1.1 91,016 - +0.0 91,016 - -1.1 91,016 - +0.3 91,354 + SMa0166 0.59 -1.0 91,354 + SMa0166 0.59 +0.2 91,354 + SMa0166 0.59 +0.8 91,354 + SMa0166 0.59 +1.1 91,355 - SMa0166 0.60 -0.2 91,355 - SMa0166 0.60 -0.2 91,659 - -0.1 91,723 - -1.3 91,723 - +1.8 91,796 + SMa0168 0.18 -0.9 92,166 - SMa0168 0.63 +0.5 92,166 - SMa0168 0.63 -0.3 92,202 + SMa0168 0.68 +0.2 92,275 + SMa0168 0.77 +1.2 92,276 - SMa0168 0.77 +0.2 92,319 + SMa0168 0.82 +0.5 92,320 - SMa0168 0.82 -0.9 92,320 - SMa0168 0.82 -2.4 92,320 - SMa0168 0.82 +0.5 92,328 + SMa0168 0.83 -0.7 92,329 - SMa0168 0.83 +1.4 92,446 - +0.6 92,499 - +1.7 92,525 + +0.3 92,961 - SMa0169 0.55 -0.4 93,068 + SMa0169 0.69 +1.6 93,108 + SMa0169 0.74 -0.3 93,109 - SMa0169 0.74 +0.8 93,154 - SMa0169 0.80 -1.9 93,154 - SMa0169 0.80 -2.6 93,236 + +3.7 93,236 + -0.5 93,353 + -2.8 93,353 + -0.2 93,353 + +0.9 93,373 + -1.0 93,374 - -0.2 93,374 - -1.7 93,386 + -2.4 93,386 + +0.6 93,387 - +0.4 93,387 - +0.9 93,410 - -2.7
Or see this region's nucleotide sequence