Strain Fitness in Sinorhizobium meliloti 1021 around SMa0168

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0163 and SMa0164 overlap by 4 nucleotidesSMa0164 and SMa0166 are separated by 21 nucleotidesSMa0166 and SMa0168 are separated by 83 nucleotidesSMa0168 and SMa0169 are separated by 60 nucleotides SMa0163: SMa0163 - PilQ2 pilus assembly protein, at 89,324 to 90,724 SMa0163 SMa0164: SMa0164 - hypothetical protein, at 90,721 to 91,017 SMa0164 SMa0166: SMa0166 - hypothetical protein, at 91,039 to 91,569 SMa0166 SMa0168: SMa0168 - hypothetical protein, at 91,653 to 92,465 SMa0168 SMa0169: SMa0169 - methyltransferase, at 92,526 to 93,311 SMa0169 Position (kb) 91 92 93Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 90.940 kb on + strand, within SMa0164at 90.940 kb on + strand, within SMa0164at 90.941 kb on - strand, within SMa0164at 90.941 kb on - strand, within SMa0164at 90.942 kb on + strand, within SMa0164at 90.943 kb on - strand, within SMa0164at 90.943 kb on - strand, within SMa0164at 91.016 kb on - strandat 91.016 kb on - strandat 91.016 kb on - strandat 91.354 kb on + strand, within SMa0166at 91.354 kb on + strand, within SMa0166at 91.354 kb on + strand, within SMa0166at 91.354 kb on + strand, within SMa0166at 91.355 kb on - strand, within SMa0166at 91.355 kb on - strand, within SMa0166at 91.659 kb on - strandat 91.723 kb on - strandat 91.723 kb on - strandat 91.796 kb on + strand, within SMa0168at 92.166 kb on - strand, within SMa0168at 92.166 kb on - strand, within SMa0168at 92.202 kb on + strand, within SMa0168at 92.275 kb on + strand, within SMa0168at 92.276 kb on - strand, within SMa0168at 92.319 kb on + strand, within SMa0168at 92.320 kb on - strand, within SMa0168at 92.320 kb on - strand, within SMa0168at 92.320 kb on - strand, within SMa0168at 92.328 kb on + strand, within SMa0168at 92.329 kb on - strand, within SMa0168at 92.446 kb on - strandat 92.499 kb on - strandat 92.525 kb on + strandat 92.961 kb on - strand, within SMa0169at 93.068 kb on + strand, within SMa0169at 93.108 kb on + strand, within SMa0169at 93.109 kb on - strand, within SMa0169at 93.154 kb on - strand, within SMa0169at 93.154 kb on - strand, within SMa0169at 93.236 kb on + strandat 93.236 kb on + strandat 93.353 kb on + strandat 93.353 kb on + strandat 93.353 kb on + strandat 93.373 kb on + strandat 93.374 kb on - strandat 93.374 kb on - strandat 93.386 kb on + strandat 93.386 kb on + strandat 93.387 kb on - strandat 93.387 kb on - strandat 93.410 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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90,940 + SMa0164 0.74 -0.6
90,940 + SMa0164 0.74 -4.1
90,941 - SMa0164 0.74 +1.2
90,941 - SMa0164 0.74 +2.1
90,942 + SMa0164 0.74 -1.2
90,943 - SMa0164 0.75 -0.7
90,943 - SMa0164 0.75 -1.1
91,016 - +0.0
91,016 - -1.1
91,016 - +0.3
91,354 + SMa0166 0.59 -1.0
91,354 + SMa0166 0.59 +0.2
91,354 + SMa0166 0.59 +0.8
91,354 + SMa0166 0.59 +1.1
91,355 - SMa0166 0.60 -0.2
91,355 - SMa0166 0.60 -0.2
91,659 - -0.1
91,723 - -1.3
91,723 - +1.8
91,796 + SMa0168 0.18 -0.9
92,166 - SMa0168 0.63 +0.5
92,166 - SMa0168 0.63 -0.3
92,202 + SMa0168 0.68 +0.2
92,275 + SMa0168 0.77 +1.2
92,276 - SMa0168 0.77 +0.2
92,319 + SMa0168 0.82 +0.5
92,320 - SMa0168 0.82 -0.9
92,320 - SMa0168 0.82 -2.4
92,320 - SMa0168 0.82 +0.5
92,328 + SMa0168 0.83 -0.7
92,329 - SMa0168 0.83 +1.4
92,446 - +0.6
92,499 - +1.7
92,525 + +0.3
92,961 - SMa0169 0.55 -0.4
93,068 + SMa0169 0.69 +1.6
93,108 + SMa0169 0.74 -0.3
93,109 - SMa0169 0.74 +0.8
93,154 - SMa0169 0.80 -1.9
93,154 - SMa0169 0.80 -2.6
93,236 + +3.7
93,236 + -0.5
93,353 + -2.8
93,353 + -0.2
93,353 + +0.9
93,373 + -1.0
93,374 - -0.2
93,374 - -1.7
93,386 + -2.4
93,386 + +0.6
93,387 - +0.4
93,387 - +0.9
93,410 - -2.7

Or see this region's nucleotide sequence