Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0130 and SMa0132 overlap by 1 nucleotides SMa0132 and SMa0134 are separated by 110 nucleotides SMa0134 and SMa5002 are separated by 40 nucleotides SMa5002 and SMa0136 are separated by 247 nucleotides
SMa0130: SMa0130 - fatty acid desaturase, at 69,601 to 70,668
SMa0130
SMa0132: SMa0132 - hypothetical protein, at 70,668 to 70,955
SMa0132
SMa0134: SMa0134 - hypothetical protein, at 71,066 to 71,671
SMa0134
SMa5002: SMa5002 - hypothetical protein, at 71,712 to 72,026
SMa5002
SMa0136: SMa0136 - hypothetical protein, at 72,274 to 74,286
SMa0136
Position (kb) 71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 70.072 kb on + strand, within SMa0130 at 70.309 kb on + strand, within SMa0130 at 70.309 kb on + strand, within SMa0130 at 70.396 kb on + strand, within SMa0130 at 70.397 kb on - strand, within SMa0130 at 70.397 kb on - strand, within SMa0130 at 70.435 kb on - strand, within SMa0130 at 70.477 kb on + strand, within SMa0130 at 70.497 kb on - strand, within SMa0130 at 70.598 kb on + strand at 70.666 kb on + strand at 70.776 kb on + strand, within SMa0132 at 70.777 kb on - strand, within SMa0132 at 70.777 kb on - strand, within SMa0132 at 70.880 kb on + strand, within SMa0132 at 70.936 kb on + strand at 70.937 kb on - strand at 70.953 kb on + strand at 70.954 kb on - strand at 70.954 kb on - strand at 71.166 kb on + strand, within SMa0134 at 71.166 kb on + strand, within SMa0134 at 71.166 kb on + strand, within SMa0134 at 71.166 kb on + strand, within SMa0134 at 71.166 kb on + strand, within SMa0134 at 71.167 kb on - strand, within SMa0134 at 71.167 kb on - strand, within SMa0134 at 71.167 kb on - strand, within SMa0134 at 71.292 kb on + strand, within SMa0134 at 71.293 kb on - strand, within SMa0134 at 71.420 kb on + strand, within SMa0134 at 71.420 kb on + strand, within SMa0134 at 71.496 kb on - strand, within SMa0134 at 71.496 kb on - strand, within SMa0134 at 71.640 kb on + strand at 71.660 kb on + strand at 71.660 kb on + strand at 71.672 kb on - strand at 71.714 kb on - strand at 71.714 kb on - strand at 71.725 kb on - strand at 71.828 kb on + strand, within SMa5002 at 71.828 kb on + strand, within SMa5002 at 71.828 kb on + strand, within SMa5002 at 71.828 kb on + strand, within SMa5002 at 71.829 kb on - strand, within SMa5002 at 71.926 kb on - strand, within SMa5002 at 72.015 kb on + strand at 72.032 kb on + strand at 72.106 kb on + strand at 72.107 kb on - strand at 72.107 kb on - strand at 72.112 kb on + strand at 72.200 kb on - strand at 72.203 kb on + strand at 72.204 kb on - strand at 72.204 kb on - strand at 72.204 kb on - strand at 72.424 kb on + strand at 72.424 kb on + strand at 72.425 kb on - strand at 72.590 kb on + strand, within SMa0136 at 72.590 kb on + strand, within SMa0136 at 72.591 kb on - strand, within SMa0136 at 72.631 kb on + strand, within SMa0136 at 72.632 kb on - strand, within SMa0136 at 72.632 kb on - strand, within SMa0136 at 72.632 kb on - strand, within SMa0136 at 72.638 kb on - strand, within SMa0136 at 72.638 kb on - strand, within SMa0136 at 72.638 kb on - strand, within SMa0136
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 70,072 + SMa0130 0.44 +0.8 70,309 + SMa0130 0.66 +2.0 70,309 + SMa0130 0.66 -0.5 70,396 + SMa0130 0.74 -0.6 70,397 - SMa0130 0.75 +0.3 70,397 - SMa0130 0.75 -0.2 70,435 - SMa0130 0.78 +0.5 70,477 + SMa0130 0.82 +0.6 70,497 - SMa0130 0.84 +1.8 70,598 + +0.5 70,666 + -1.4 70,776 + SMa0132 0.38 -0.8 70,777 - SMa0132 0.38 -1.7 70,777 - SMa0132 0.38 +0.4 70,880 + SMa0132 0.74 +1.9 70,936 + -0.4 70,937 - -0.4 70,953 + -0.3 70,954 - +0.7 70,954 - -0.6 71,166 + SMa0134 0.17 +0.9 71,166 + SMa0134 0.17 +0.2 71,166 + SMa0134 0.17 +0.0 71,166 + SMa0134 0.17 -0.4 71,166 + SMa0134 0.17 -1.1 71,167 - SMa0134 0.17 +2.0 71,167 - SMa0134 0.17 -0.3 71,167 - SMa0134 0.17 +0.8 71,292 + SMa0134 0.37 -2.1 71,293 - SMa0134 0.37 +1.1 71,420 + SMa0134 0.58 -0.1 71,420 + SMa0134 0.58 +0.6 71,496 - SMa0134 0.71 +0.3 71,496 - SMa0134 0.71 +0.7 71,640 + +0.5 71,660 + +0.2 71,660 + +0.0 71,672 - -3.4 71,714 - -0.3 71,714 - -2.2 71,725 - -0.6 71,828 + SMa5002 0.37 +0.4 71,828 + SMa5002 0.37 +0.3 71,828 + SMa5002 0.37 -2.2 71,828 + SMa5002 0.37 -0.5 71,829 - SMa5002 0.37 +0.5 71,926 - SMa5002 0.68 +0.1 72,015 + -2.2 72,032 + +0.1 72,106 + +1.6 72,107 - -0.4 72,107 - +2.7 72,112 + -0.2 72,200 - -1.7 72,203 + -0.7 72,204 - +1.5 72,204 - -1.9 72,204 - +0.1 72,424 + -3.4 72,424 + -3.2 72,425 - +0.6 72,590 + SMa0136 0.16 +0.1 72,590 + SMa0136 0.16 +0.0 72,591 - SMa0136 0.16 -0.2 72,631 + SMa0136 0.18 -1.0 72,632 - SMa0136 0.18 -0.5 72,632 - SMa0136 0.18 -0.3 72,632 - SMa0136 0.18 -1.1 72,638 - SMa0136 0.18 +1.1 72,638 - SMa0136 0.18 +0.6 72,638 - SMa0136 0.18 +0.5
Or see this region's nucleotide sequence