Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0028 and SMa0031 are separated by 294 nucleotides SMa0031 and SMa0034 are separated by 16 nucleotides
SMa0028: SMa0028 - selenophosphate synthetase, at 17,865 to 18,914
SMa0028
SMa0031: SMa0031 - hypothetical protein, at 19,209 to 19,436
SMa0031
SMa0034: SMa0034 - protease, at 19,453 to 21,108
SMa0034
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.470 kb on - strand, within SMa0028 at 18.576 kb on + strand, within SMa0028 at 18.577 kb on - strand, within SMa0028 at 18.587 kb on + strand, within SMa0028 at 18.602 kb on + strand, within SMa0028 at 18.602 kb on + strand, within SMa0028 at 18.638 kb on - strand, within SMa0028 at 18.744 kb on + strand, within SMa0028 at 18.745 kb on - strand, within SMa0028 at 18.745 kb on - strand, within SMa0028 at 18.837 kb on + strand at 18.935 kb on + strand at 19.018 kb on + strand at 19.019 kb on - strand at 19.055 kb on - strand at 19.101 kb on + strand at 19.101 kb on + strand at 19.101 kb on + strand at 19.104 kb on + strand at 19.105 kb on - strand at 19.118 kb on + strand at 19.119 kb on - strand at 19.119 kb on - strand at 19.190 kb on - strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.211 kb on - strand at 19.546 kb on + strand at 19.563 kb on + strand at 19.602 kb on + strand at 19.831 kb on - strand, within SMa0034 at 19.837 kb on + strand, within SMa0034 at 19.898 kb on + strand, within SMa0034 at 19.899 kb on - strand, within SMa0034 at 19.899 kb on - strand, within SMa0034 at 19.915 kb on + strand, within SMa0034 at 19.916 kb on - strand, within SMa0034 at 19.919 kb on + strand, within SMa0034 at 19.919 kb on + strand, within SMa0034 at 19.919 kb on + strand, within SMa0034 at 19.919 kb on + strand, within SMa0034 at 19.919 kb on + strand, within SMa0034 at 19.919 kb on + strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.920 kb on - strand, within SMa0034 at 19.924 kb on - strand, within SMa0034 at 19.924 kb on - strand, within SMa0034 at 19.997 kb on + strand, within SMa0034 at 20.198 kb on + strand, within SMa0034 at 20.199 kb on - strand, within SMa0034 at 20.203 kb on + strand, within SMa0034 at 20.204 kb on - strand, within SMa0034 at 20.246 kb on + strand, within SMa0034 at 20.246 kb on + strand, within SMa0034 at 20.323 kb on - strand, within SMa0034 at 20.323 kb on - strand, within SMa0034 at 20.323 kb on - strand, within SMa0034 at 20.323 kb on - strand, within SMa0034 at 20.324 kb on + strand, within SMa0034 at 20.324 kb on + strand, within SMa0034 at 20.324 kb on + strand, within SMa0034 at 20.325 kb on - strand, within SMa0034
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 18,470 - SMa0028 0.58 +0.9 18,576 + SMa0028 0.68 +2.1 18,577 - SMa0028 0.68 -0.5 18,587 + SMa0028 0.69 -1.4 18,602 + SMa0028 0.70 -2.2 18,602 + SMa0028 0.70 +0.9 18,638 - SMa0028 0.74 +0.5 18,744 + SMa0028 0.84 -1.9 18,745 - SMa0028 0.84 +0.8 18,745 - SMa0028 0.84 -1.2 18,837 + +0.3 18,935 + +1.2 19,018 + +1.2 19,019 - +0.1 19,055 - -0.6 19,101 + +0.6 19,101 + -2.1 19,101 + +0.4 19,104 + +0.9 19,105 - -0.5 19,118 + -2.0 19,119 - +0.5 19,119 - -0.2 19,190 - -0.5 19,210 + +0.4 19,210 + +0.5 19,210 + -1.1 19,211 - +0.3 19,546 + +0.1 19,563 + -0.8 19,602 + -1.6 19,831 - SMa0034 0.23 +0.2 19,837 + SMa0034 0.23 +1.3 19,898 + SMa0034 0.27 +0.4 19,899 - SMa0034 0.27 -2.0 19,899 - SMa0034 0.27 +0.4 19,915 + SMa0034 0.28 +0.3 19,916 - SMa0034 0.28 -0.4 19,919 + SMa0034 0.28 -1.1 19,919 + SMa0034 0.28 -0.4 19,919 + SMa0034 0.28 -0.6 19,919 + SMa0034 0.28 +1.3 19,919 + SMa0034 0.28 +1.1 19,919 + SMa0034 0.28 -2.4 19,920 - SMa0034 0.28 -0.2 19,920 - SMa0034 0.28 -1.0 19,920 - SMa0034 0.28 +0.8 19,920 - SMa0034 0.28 -0.4 19,920 - SMa0034 0.28 -0.7 19,920 - SMa0034 0.28 +0.0 19,920 - SMa0034 0.28 -0.3 19,920 - SMa0034 0.28 +0.1 19,920 - SMa0034 0.28 -1.7 19,920 - SMa0034 0.28 +1.1 19,920 - SMa0034 0.28 -1.2 19,924 - SMa0034 0.28 -2.1 19,924 - SMa0034 0.28 -0.4 19,997 + SMa0034 0.33 -1.4 20,198 + SMa0034 0.45 -1.5 20,199 - SMa0034 0.45 -0.6 20,203 + SMa0034 0.45 +0.9 20,204 - SMa0034 0.45 +0.2 20,246 + SMa0034 0.48 +2.1 20,246 + SMa0034 0.48 +0.2 20,323 - SMa0034 0.53 +0.6 20,323 - SMa0034 0.53 -0.1 20,323 - SMa0034 0.53 +1.1 20,323 - SMa0034 0.53 -0.1 20,324 + SMa0034 0.53 -0.9 20,324 + SMa0034 0.53 -0.9 20,324 + SMa0034 0.53 -1.3 20,325 - SMa0034 0.53 -0.2
Or see this region's nucleotide sequence