Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21679

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20900 and SM_b21679 are separated by 9 nucleotidesSM_b21679 and SM_b20901 are separated by 125 nucleotides SM_b20900: SM_b20900 - hypothetical protein, at 1,307,831 to 1,309,765 _b20900 SM_b21679: SM_b21679 - hypothetical protein, at 1,309,775 to 1,309,963 _b21679 SM_b20901: SM_b20901 - transcriptional regulator, at 1,310,089 to 1,311,300 _b20901 Position (kb) 1309 1310Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1308.978 kb on + strand, within SM_b20900at 1308.978 kb on + strand, within SM_b20900at 1308.978 kb on + strand, within SM_b20900at 1308.979 kb on - strand, within SM_b20900at 1308.979 kb on - strand, within SM_b20900at 1308.979 kb on - strand, within SM_b20900at 1308.979 kb on - strand, within SM_b20900at 1309.014 kb on + strand, within SM_b20900at 1309.014 kb on + strand, within SM_b20900at 1309.787 kb on + strandat 1309.787 kb on + strandat 1309.824 kb on + strand, within SM_b21679at 1310.021 kb on - strandat 1310.159 kb on - strandat 1310.188 kb on + strandat 1310.189 kb on - strandat 1310.189 kb on - strandat 1310.369 kb on + strand, within SM_b20901at 1310.370 kb on - strand, within SM_b20901at 1310.370 kb on - strand, within SM_b20901at 1310.489 kb on + strand, within SM_b20901at 1310.489 kb on + strand, within SM_b20901at 1310.489 kb on + strand, within SM_b20901at 1310.519 kb on + strand, within SM_b20901at 1310.519 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.563 kb on - strand, within SM_b20901at 1310.563 kb on - strand, within SM_b20901

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,308,978 + SM_b20900 0.59 -0.7
1,308,978 + SM_b20900 0.59 +0.5
1,308,978 + SM_b20900 0.59 -0.1
1,308,979 - SM_b20900 0.59 -1.3
1,308,979 - SM_b20900 0.59 +1.1
1,308,979 - SM_b20900 0.59 -1.5
1,308,979 - SM_b20900 0.59 -0.2
1,309,014 + SM_b20900 0.61 -2.8
1,309,014 + SM_b20900 0.61 +0.6
1,309,787 + -0.0
1,309,787 + +0.6
1,309,824 + SM_b21679 0.26 +1.3
1,310,021 - -1.8
1,310,159 - -0.5
1,310,188 + +0.5
1,310,189 - -0.6
1,310,189 - +0.9
1,310,369 + SM_b20901 0.23 -0.6
1,310,370 - SM_b20901 0.23 -0.6
1,310,370 - SM_b20901 0.23 -2.1
1,310,489 + SM_b20901 0.33 -0.7
1,310,489 + SM_b20901 0.33 -0.5
1,310,489 + SM_b20901 0.33 -2.1
1,310,519 + SM_b20901 0.35 -2.1
1,310,519 + SM_b20901 0.35 -2.3
1,310,562 + SM_b20901 0.39 -3.1
1,310,562 + SM_b20901 0.39 +1.8
1,310,562 + SM_b20901 0.39 +0.7
1,310,562 + SM_b20901 0.39 -0.2
1,310,562 + SM_b20901 0.39 -0.8
1,310,562 + SM_b20901 0.39 -0.2
1,310,563 - SM_b20901 0.39 +0.4
1,310,563 - SM_b20901 0.39 -1.1

Or see this region's nucleotide sequence